Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq74 84.2 2e-11 seq1324 82.4 6e-11 >seq74 Length=13208 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 114390 |||||||| |||||||||||||||| |||||||||| ||| | | |||| ||||||| Sbjct 3728 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGAGCGATCAAAGGAAC 3787 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 3788 CATAACTGATTTAATGAGCCATTCG 3812 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 115587 |||||||| |||||||||||||||| |||||||||| ||| | | |||| ||||||| Sbjct 3728 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGAGCGATCAAAGGAAC 3787 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 3788 CATAACTGATTTAATGAGCCATTCG 3812 >seq1324 Length=11587733 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||| ||||||||||| || || ||| ||| ||||| |||||||| || | Sbjct 8091434 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 8091375 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| | || |||| |||||||| ||||| ||||| | |||||| || || Sbjct 8091374 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 8091315 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 8091314 ATGCCCTCCTTGTCC 8091300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396882885110992