Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_010237.1 Length=63395 Score E Sequences producing significant alignments: (Bits) Value seq242 396 1e-105 >seq242 Length=156412533 Score = 396 bits (438), Expect = 1e-105 Identities = 323/388 (83%), Gaps = 3/388 (1%) Strand=Plus/Minus Query 6167 GGTGCGCATACTTTCGTCGCGATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGT 6226 ||| |||||||| || ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 113594108 GGTACGCATACTATCATCGCGATAGATGATCGGGGATTCAGTAACATGCACGCCGGAAGT 113594049 Query 6227 GAACTCAAAGAGGGTTCCGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGAGCCTTAGC 6286 ||| || || |||||| || |||||||| ||||||| ||| ||| |||| | |||||| Sbjct 113594048 GAATTCTAACAGGGTTAAGGAGTCGTTCTAGTACTGTATTCTGCAGCCCAGTGGCTTAGC 113593989 Query 6287 GTTAACTTCCGGGGCCACACCGGCGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACAT 6346 ||| | ||||| | ||||||||||| ||| ||||| |||||||||||||||||||||| Sbjct 113593988 GTT-AGATCCGGAGTCACACCGGCGCTAACGTCAGCAAGCAGGGTGTGGAAGTAGGACA- 113593931 Query 6347 TTTCATGTCAGGCCACTTCTTTCCTGATTGGGGTTTTGCTATTACGTTGTGAATTTCTGA 6406 ||||||||||| ||| |||||||| || |||| || ||| ||||||||||| ||||| Sbjct 113593930 TTTCATGTCAGTCCAGTTCTTTCCGGAGCGGGGCGTTCATATCACGTTGTGAATCTCTGA 113593871 Query 6407 AGCTGTGATGAC-GCCGAGCCGTAATTTGTGCCACGCATCATCTCCCTGTTCGACAGCTC 6465 ||| |||| || ||||||||||||| |||||||||||||| | ||||||||||||| Sbjct 113593870 AGCGTTGATCACATACGAGCCGTAATTTATGCCACGCATCATCCCGCTGTTCGACAGCTG 113593811 Query 6466 TCACGTCGATCCCAGTACGCTGCAGGATAATGTCCGGTGTCATGCTGCCACCTTCTGTTC 6525 |||| ||||||| ||||| ||| ||| ||||| || |||||| |||||| |||| | Sbjct 113593810 TCACATCGATCCTCGTACGTAGCATGATCATGTCTGGAGTCATGATGCCACGATCTGCTA 113593751 Query 6526 AGTGGCTTTTTGTTTCAGGAATCCAAGA 6553 || | ||||||||||||||||||||| Sbjct 113593750 TATGCCGTTTTGTTTCAGGAATCCAAGA 113593723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202647540087136