Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1324 136 4e-27 seq1205 131 2e-25 >seq1324 Length=11587733 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || |||||||| || |||||||| || | | ||||||| | || Sbjct 8089023 AGCACCAGGTGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 8088964 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| ||||| || ||||| || || Sbjct 8088963 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 8088904 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || ||||| || | ||| | |||| Sbjct 8088903 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTC 8088844 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||||||| || || || || || |||||| Sbjct 8088843 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATT 8088811 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | | ||||||| | || Sbjct 8091647 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 8091588 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| |||| |||| ||||||||| ||||| || ||||| || || Sbjct 8091587 TCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCC 8091528 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || |||| || ||||| || | ||| | |||| Sbjct 8091527 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTC 8091468 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| ||||| ||||| || ||||| Sbjct 8091467 TTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 8091436 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | || ||||||| | ||| Sbjct 8089251 AGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCT 8089192 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 8089191 TCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 8089132 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || ||||| || | ||| | |||| Sbjct 8089131 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTC 8089072 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || || || || ||||| Sbjct 8089071 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8089040 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | ||||||| | ||| Sbjct 8091875 AGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 8091816 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || |||| |||| ||||||||| || ||||| ||||| || || Sbjct 8091815 TCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 8091756 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || ||||| | || | |||| Sbjct 8091755 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTC 8091696 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || ||||| || ||||| Sbjct 8091695 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8091664 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | ||||||| | || Sbjct 8089479 AGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 8089420 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || |||| |||| ||||||||| ||||| || ||||| || || Sbjct 8089419 TCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCC 8089360 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || || ||||| | || | |||| Sbjct 8089359 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTC 8089300 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || ||||| || ||||| Sbjct 8089299 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 8089268 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || ||||| || |||||||| || | || ||||||| | ||| Sbjct 8091419 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCT 8091360 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| || || || || Sbjct 8091359 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 8091300 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || |||| || ||||| || | || | |||| Sbjct 8091299 TGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 8091240 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGC 64441 ||||| |||| || || || || || ||| Sbjct 8091239 TTGCCAGTCAGGGTCTTCACAAAGATCTGC 8091210 Score = 86.0 bits (94), Expect = 6e-12 Identities = 122/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGG--TGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 || || |||||||| || | | || ||||| | ||||| |||||||| || ||| | | Sbjct 8089897 TTCTGGATGTTGTAGTCGGAAAAGGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGA 8089838 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | ||| |||||| || |||||||| ||||| || || || || || ||| ||| || Sbjct 8089837 TCAGCT-CTGCTG-TCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 8089780 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCA 64421 | | || |||| | ||||| || | ||| | |||||||||||||| Sbjct 8089779 CGATGGTGTCACTGAGCTCCACCTCGAGAGTGATGGTCTTGCCGGTCA 8089732 >seq1205 Length=14428146 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | || ||| ||| | ||||| ||||||||||| Sbjct 1810536 GTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCATCTTCCAGCTGCTTGCCA 1810477 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| |||| ||||||||| ||||| || ||||| || || || || || ||| Sbjct 1810476 GCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 1810417 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || || || || | || | ||||||||| |||| || Sbjct 1810416 ACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 1810357 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 1810356 TTGACGAAGATCTGCATTTT 1810337 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || || | || ||||| || || |||||||| || | Sbjct 1811023 ACCACCCCGCAGGCGCAGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGA 1810964 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| ||| | ||||| ||||||||||| ||| |||| |||| ||||||||| ||||| Sbjct 1810963 GAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGG 1810904 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || ||||| ||||| ||| || ||| | || |||| || || || Sbjct 1810903 GATGCCTTCCTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAAC 1810844 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||| || || || || || ||||| Sbjct 1810843 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1810796 Score = 125 bits (138), Expect = 7e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | |||||| ||||| Sbjct 1810779 AGCACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCT 1810720 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| |||| |||| ||||||||| ||||| || ||||| || || Sbjct 1810719 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 1810660 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| || ||| | || |||| || || || || | || | ||| Sbjct 1810659 TGGA-TCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 1810601 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || || || || ||||| Sbjct 1810600 CTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1810568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499413114706240