Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1324 98.7 1e-15 seq235 91.5 1e-13 >seq1324 Length=11587733 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| || || ||| ||||| || || ||||| | | Sbjct 8091629 GATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTACCAGCA 8091570 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | ||| ||||| ||||| |||||||| ||||| ||| || || | Sbjct 8091569 AAAATCAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACA 8091510 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | |||||| | | ||||||||||| || | || || || ||||| ||||| Sbjct 8091509 TTTTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAGGGTTTTC 8091450 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 8091449 ACGAAGATCTGCAT 8091436 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||| | || ||| || || || || ||||| | Sbjct 8089235 TTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCTTCCAGCTGCTTACCAG 8089176 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| || | ||| ||||| || || || ||||| ||||| ||| || || | Sbjct 8089175 CAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGA 8089116 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||| | | ||||||||||| || | || || || ||||| || | Sbjct 8089115 CATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAGGGTCT 8089056 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 8089055 TCACAAAGATCTGCAT 8089040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| || || || ||||||||||| || || ||| ||||| || || || || | Sbjct 8089007 TTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTGCCAG 8088948 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| || | ||| ||||| ||||| || ||||| ||||| ||| || || | Sbjct 8088947 CAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA 8088888 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||| | | ||||||||| | || | || || || ||||| || | Sbjct 8088887 CATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCT 8088828 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 8088827 TCACAAAGATCTGCAT 8088812 >seq235 Length=1083483 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||| | ||||||||| | ||| |||||||||||||| ||| ||||| || ||||| | Sbjct 695981 TGTATTCCACGATCTCAGTGCACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGT 696040 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 153752 |||| || | ||||| | ||| ||| |||||||||| || ||| |||||| Sbjct 696041 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCG 696093 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||| | ||||||||||| ||| ||||||||||| || ||| ||||| || ||||| | Sbjct 698905 TGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 698964 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 153752 |||| || | ||||| | ||| ||| |||||||||| || ||| |||||| Sbjct 698965 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCG 699017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496032283125120