Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1324 93.3 4e-14 seq235 82.4 7e-11 >seq1324 Length=11587733 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| | || ||| || ||||| ||||| ||||| ||||| || || ||| Sbjct 8089269 ATCCCACCCCTGAGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCG 8089210 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| || || || || | |||| | |||||||| || Sbjct 8089209 GAGAGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGG 8089150 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || || || |||| || | |||||| | ||| Sbjct 8089149 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCC 8089090 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || |||||||| | || |||||||| || || || ||||| || |||||| Sbjct 8089089 ACCTCGAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATC 8089039 >seq235 Length=1083483 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 ||| || || || || |||||||||||||| ||| ||||||||||||| | ||| ||| Sbjct 696093 CGAGACTGGCACCCCCTACATGCTCTACAAGGACTCCTGCAACAGGAAGAGCAACCAGCA 696034 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 ||| |||| || || ||||| || || || ||| | || || | ||||||| Sbjct 696033 GAACCTGGGCACCATCAAATGCAGCAACCTGTGCACTGAGATCGTGGAATACA 695981 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 ||| || || || || |||||||||||||| ||| ||||||||||||| | ||| ||| Sbjct 699017 CGAGACTGGCACCCCCTACATGCTCTACAAGGACTCCTGCAACAGGAAGAGCAACCAGCA 698958 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 ||| |||| || || || || || || || ||| |||| || | ||||||| Sbjct 698957 GAACCTGGGCACCATCAAGTGCAGCAACCTGTGCACCGAGATCGTGGAATACA 698905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451793606116160