Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq870 185 1e-41 seq1261 120 4e-22 >seq870 Length=27993427 Score = 185 bits (204), Expect = 1e-41 Identities = 221/300 (74%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| |||| || ||||| |||||||| ||| || ||||| ||| | | || | Sbjct 2058297 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGAGAGGCCG 2058238 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || |||||||| || || || | || |||||||||||||| ||||||||| | |||| Sbjct 2058237 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 2058178 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| |||| ||||| |||| ||| ||||| ||||||| ||| | ||| Sbjct 2058177 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGTGCCCCCATCTCCACCATGG 2058118 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| || |||||||| ||||| || || || || || | | ||| | ||| || || | Sbjct 2058117 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCGGGGTACAGCTCCA 2058058 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || |||| ||| || || || | |||| ||| || || ||||| || || ||| ||| Sbjct 2058057 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTGCAA 2057998 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || | ||| || || | ||||||||| |||| || ||||| | ||| ||||| Sbjct 2056369 ATGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGTGCTTGAGC 2056310 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || |||||||| | |||||| || | |||||| || |||||||||||||| | || ||| Sbjct 2056309 ACGTCGCAGACGCGGTTGTGCTCACGCAGCCAGATCGTGGCGTACATCATCAGCCCTGGC 2056250 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | || ||||| || | |||||| | |||||||| | |||||||| | ||| | Sbjct 2056249 ACCAGCCCGAACACCTCCTGCCCCACGGAGAAGCGCAGGTGCTCGGGCACGTGGGGTGGG 2056190 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 |||||||| | |||| || || || || || || |||||||| || || || | | Sbjct 2056189 TACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCTCCATCGATCATC 2056130 Query 9967 TG 9968 || Sbjct 2056129 TG 2056128 Score = 120 bits (132), Expect = 4e-22 Identities = 171/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 9453 GAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAA 9512 ||| |||| || | |||| | |||||||| | | |||||| |||||||| | ||| Sbjct 2057530 GAAAGATTTGACCATATGGGACAGTCCGTGCTCCAGCATGATGGAGTTGTTGTAGAGGAA 2057471 Query 9513 GTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCA 9572 || | | | |||| | |||| || | || ||| |||| ||| | ||||| Sbjct 2057470 CTGCTGGAAGGTGTACTCCTGGTCGTTGATCTGGAAGGTATCGGGCAGCAGTGGGTGCCA 2057411 Query 9573 GCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACCG 9630 | |||| ||||| ||||||||||| || || |||||||||||||| || ||| | Sbjct 2057410 GTGGTACAGGGTGTTGAACTCGGCTGCGATGCGGTTCTGGTACTGGAACTTCTGGT--TG 2057353 Query 9631 AACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689 ||||| | ||| |||||||| | |||| |||||||||||| || || ||||| ||||| Sbjct 2057352 AACAGCAGCTCGGGGTCAAACTTCAGCTTGAAGTGGTACCCACTCAGGTGCTGCACATA 2057294 >seq1261 Length=11648728 Score = 120 bits (132), Expect = 4e-22 Identities = 206/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | |||| || |||||| ||| || | ||| || | || ||| | Sbjct 10001171 GGAACGCCACATACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCGAGGGATGCTG 10001112 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | |||||||| || || || | || || || || ||||||||||||||| | |||| Sbjct 10001111 TCTTCACGATCTCAAAGCCAGTAGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 10001052 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| || | | ||||| |||| |||||| ||||| || | ||| | |||| Sbjct 10001051 AGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 10000992 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || || ||| | ||| | ||||| |||| | ||||| | ||| | || | Sbjct 10000991 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAGCAAGCCTGGGTAAAACTCCA 10000932 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 ||| || | ||| ||||| || |||||| ||| || ||| |||| | ||| ||| || Sbjct 10000931 GAGCATCAATGTCTCCATACAGCTCTTCCAGCTCCGCTGCTTTCTCTTCCTCTCCTGCA 10000873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723392407326400