Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_013648.1 Length=39576 Score E Sequences producing significant alignments: (Bits) Value seq24227 232 2e-56 >seq24227 Length=2004 Score = 232 bits (256), Expect = 2e-56 Identities = 453/664 (68%), Gaps = 18/664 (3%) Strand=Plus/Plus Query 16937 GGCACCTCTATTTTCGATCCAGTTCTTTGTGAATTGGGTTATCGCTGGTTTACCCCAAAA 16996 || || || || || || || ||| | ||||||||| ||| |||||| ||||| | Sbjct 348 GGAACATCAATATTTGACCCTGTTTTGTGTGAATTGATGTATAACTGGTTCACCCCGCAC 407 Query 16997 ACAAAAAGCAATATTTTTGATCCATTCGCTGGTGGTTCTGTTCGTGGAATAGTAGCAAAA 17056 | ||| || || | |||||| || ||||||||| |||||||| || || | Sbjct 408 AAAAACTCTAAAATCTATGATCCGTTTGCTGGTGGTAGCGTTCGTGGTGTAACTGCTTCA 467 Query 17057 GTTCTTGGACATAATTATACAGGTATTGATTTAAGAGCAGAACAAGTAAGCGCAAATTAT 17116 || | || ||| | |||||||| || ||| | ||| || ||||| || ||| | Sbjct 468 ATTTTAGGGCATGAATATACAGGAATAGATCTTAGAAAGGAGCAAGTTGAAGCTAATATT 527 Query 17117 GCTAATGCTCGAGAAATTGGTTTG---AGCGATATTAATTGGATTTGTGATGATAGCTTA 17173 | |||||| |||| ||| | | ||||||| ||||| ||||||||| || Sbjct 528 GAAAATGCTAAGCAAATAGGTGTTCCTAAGGATATTACATGGATCAATGATGATAGTTTG 587 Query 17174 GATATAGATGAACATATTGAAAATGAAAGCCAAGACTTGTTATTTACATGTCCGCCGTAT 17233 || | ||||| ||||| || || || ||||| || ||||| || ||||| |||||| Sbjct 588 AATGTTGATGATTATATTAAAGATAGCAGTCAAGATTTATTATTGACTTGTCCTCCGTAT 647 Query 17234 GCAGACCTTGAAGTTTATTCAGACGATGAACGAGACATTAGTAATATGTCCTATGAAG-- 17291 || || |||||||| ||||| || ||| | || || || ||| |||||| Sbjct 648 GCCGATCTTGAAGTATATTCTGATGATCCGCAGGATATATCGAACATGA---ATGAAGCT 704 Query 17292 -AGTTTGA--AGAAGTATATAGTGAAATTTTAAAACGTTCTGCTAGAAAACTAAAAGATA 17348 | ||||| ||| ||| | |||||| || |||||| ||| | ||| | ||||||| Sbjct 705 GATTTTGATAAGACTTATGT--TGAAATATTGAAACGTGGTGCCAATAAAGTCAAAGATA 762 Query 17349 ATCGCTTTGCTGTTGTTACTATTTCAGATGTTCGAGACAAAAAAG----GCTTCTATAGA 17404 ||||||||||||| || |||||| ||||| || || |||| || | ||||| Sbjct 763 ATCGCTTTGCTGTAGTCGTTATTTCTGATGTCAGAAGTAAGAAAGACGGGCAT-TATAGG 821 Query 17405 GATTTAACAGGATTAACTAAACAAGCTTTTTCTGAAGAAGGATTAtttttttATAATGAC 17464 ||||| ||| |||||||| | || ||| || |||| || | |||||||| || Sbjct 822 GATTTGCAGGGACTAACTAAAAAGGCATTTAAAGATCAAGGTTTTATATTTTATAACGAT 881 Query 17465 ATGATTTTATTGAACACTGCTGGTTCTGCAGCATTAAGGGCTAGACAATCAATGAACAAT 17524 || | ||| | || || |||||| | || | ||||| | | |||| ||| Sbjct 882 ATTGTGTTAGTCAATGTTGTTGGTTCGGGGGCCATTCGGGCTCGCCGTAACATGATAAAT 941 Query 17525 AGAAAAGTAGTTAGAATCCACCAAAATGTCTTAGTGTTCTACAAAGGAAATCCTCAAAAA 17584 |||||||||||||| || |||||||| ||||||||||| |||||| || || | || Sbjct 942 CGAAAAGTAGTTAGATGTCATCAAAATGTTTTAGTGTTCTATAAAGGAGATACTAAGCAA 1001 Query 17585 ATTA 17588 |||| Sbjct 1002 ATTA 1005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126465865337376