Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq235 107 3e-18 >seq235 Length=1083483 Score = 107 bits (118), Expect = 3e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 |||||| ||||| ||||| |||||||| |||||||| ||||||||||| | | ||| || Sbjct 690962 GTTGGGCTCGGCGATGTGGATGTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCCCTGTC 691021 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 ||| ||||| || | ||||| || || || ||||||||||| |||||| Sbjct 691022 TGCAGCCATCTTCAGGATGGTTTTTTGGGAGATCTCCCACACAGTCTTG 691070 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || || || ||||||| |||||| | | |||| ||||| | || |||| | Sbjct 693128 CTGGAACTCCCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 693187 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | ||||| || ||| |||||| |||||||| | | ||| ||| Sbjct 693188 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTTGGCATGGGGGAGATGAGGAGGCT 693247 Query 204316 GTTGCGCACACCGTA 204330 ||| | ||||||||| Sbjct 693248 GTTCCTCACACCGTA 693262 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || ||||| || ||||||| |||||| | | |||| ||||| | || |||| | Sbjct 689240 CTGGAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 689299 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | ||||| || ||| |||||| |||||||| | | ||| ||| Sbjct 689300 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTTGGCATGGGGGAGATGAGGAGGCT 689359 Query 204316 GTTGCGCACACCGTA 204330 ||| | ||||| || Sbjct 689360 GTTCCTGACACCATA 689374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794786486533760