Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1324 141 1e-28 seq1205 131 2e-25 >seq1324 Length=11587733 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| |||||| |||| || |||||| ||||| ||||||||||| Sbjct 8091891 GCCACCCCTGAGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 8091832 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || |||||| | || || ||||||||||| ||||| |||| | ||||||||| | || Sbjct 8091831 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGG 8091772 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| |||||| ||| | || | | ||||| || | || || Sbjct 8091771 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAAC 8091712 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 8091711 TTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8091664 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| ||||||||||| || |||||| | Sbjct 8089254 CGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCA 8089195 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| || || || |||| | ||||||||| | || | || |||||| Sbjct 8089194 TCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTG 8089135 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | ||||| || | ||||| || | |||||| Sbjct 8089134 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATG 8089075 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || |||||||| ||||| Sbjct 8089074 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8089040 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | |||| |||||| |||| || || || ||||| |||||||| || Sbjct 8089038 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAC 8088979 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 8088978 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 8088919 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||||| || | | ||||| || | ||||| Sbjct 8088918 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 8088859 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||| ||||| ||||| || || |||||||| |||||| Sbjct 8088858 TCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATT 8088811 Score = 136 bits (150), Expect = 4e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | |||| |||||| |||| || ||| || ||||| ||||||||||| Sbjct 8091434 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 8091375 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 8091374 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 8091315 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| |||||| ||| | | | | ||||| || | ||||| Sbjct 8091314 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACC 8091255 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGC 46591 || | |||||||| ||||| ||||| || || |||||||| ||| Sbjct 8091254 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGC 8091210 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| |||||| |||| || |||||| ||||| |||||||| || Sbjct 8089495 GCCACCCCTGAGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGA 8089436 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || |||||| | || || ||||||||||| ||||| |||| | ||||||||| | || Sbjct 8089435 CAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGAGG 8089376 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | | ||||||||| |||||| ||| | || | | ||||| || | || || Sbjct 8089375 GATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAAC 8089316 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 8089315 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 8089268 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 46406 TTTTGGATATTGTAGTCGGATA--GAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 || ||||| ||||||||||| | |||||||| | || || |||||||| || || || | Sbjct 8089897 TTCTGGATGTTGTAGTCGGAAAAGGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGA 8089838 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 || ||| ||||| ||| | || | || ||||||||| |||||| ||||| || Sbjct 8089837 TC-AGCTCTGCT-GTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 8089780 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | ||||| || ||||| || | |||||||| ||||| |||| Sbjct 8089779 CGATGGTGTCACTGAGCTCCACCTCGAGAGTGATGGTCTTGCCGGTCA 8089732 >seq1205 Length=14428146 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | |||| ||| ||||||| ||| ||||| ||||| |||||||| || Sbjct 1810794 CCACCTCTGAGGCGCAGCACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAC 1810735 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || ||||||||||| || || |||| | ||||||||| | || Sbjct 1810734 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1810675 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| || | || | | ||||| || | || || Sbjct 1810674 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACC 1810615 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 1810614 TCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1810568 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || || |||| ||| ||||| ||||| ||||||||||| || || ||| | Sbjct 1810554 CGCAGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCA 1810495 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | ||||||||| | || | || |||||| Sbjct 1810494 TCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1810435 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | ||||| || | || || || | |||||| Sbjct 1810434 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1810375 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || ||||| ||||| || || || ||||| |||||||| Sbjct 1810374 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTT 1810337 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || || |||| ||| ||||| ||||| |||||||| || || || ||| | Sbjct 1811010 CGCAGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGCCCA 1810951 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | ||||||||| | || | || |||||| Sbjct 1810950 TCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1810891 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || ||| || ||| | || | | ||||| || | || || || | |||||| Sbjct 1810890 TCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1810831 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || |||||||| ||||| Sbjct 1810830 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1810796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564976298953920