Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1324 145 8e-30 seq1205 138 1e-27 seq242 87.8 2e-12 seq458 86.0 6e-12 >seq1324 Length=11587733 Score = 145 bits (160), Expect = 8e-30 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 38246 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 ||| || || || || || || || ||||| ||||||||| | || || ||| ||| || Sbjct 8091210 GCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGA 8091269 Query 38306 CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365 || | | ||| | || | || |||| ||||| ||||| |||||| | ||||| || Sbjct 8091270 CACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCA 8091329 Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425 | |||| || | || ||||| |||||||| || | |||||||||| |||||||||||| Sbjct 8091330 GAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAACAT 8091389 Query 38426 CCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || || | || ||||| |||||||||| ||||||| || Sbjct 8091390 CCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 8091434 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 8091664 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8091723 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 8091724 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 8091783 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| |||| ||| ||||| |||||||| || | ||||||||| |||||||||| Sbjct 8091784 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 8091843 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| |||||||||| | || || ||| Sbjct 8091844 ATCCAGAAGGAGTCAACTCTGCACCTGGTGCTGCGCCTCAGGGGTGGC 8091891 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 8089268 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8089327 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || || || | ||||| Sbjct 8089328 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCA 8089386 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| |||| ||| ||||| |||||||| || | ||||||||| |||||||| Sbjct 8089387 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 8089446 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| |||||||||| | || || ||| Sbjct 8089447 CATCCAGAAGGAGTCAACTCTGCACCTGGTGCTGCGCCTCAGGGGTGGC 8089495 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || ||||| |||||||| |||| || ||| ||| Sbjct 8091436 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8091495 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| ||||| || || || || | ||||| Sbjct 8091496 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCAGACCAG 8091555 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| |||| || || || |||||||| || | ||||||||| ||||||||| Sbjct 8091556 CAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 8091615 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| |||||| | || ||||| |||||||||| Sbjct 8091616 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCG 8091650 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| |||| || ||| ||| Sbjct 8089040 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8089099 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 8089100 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 8089159 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || |||||||| || | |||||||||| |||||||||| Sbjct 8089160 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAAC 8089219 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| |||||||||| Sbjct 8089220 ATCCAGAAGGAGTCAACTCTGCACCTGGTGCTGCG 8089254 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || || || || || || || ||||| |||||||| | || || ||| | Sbjct 8088808 AACAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTGGAGCC 8088867 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | || | || |||| ||||| || || || || | || Sbjct 8088868 CAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGA 8088927 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || ||||| |||||||| || | ||||||||| ||||| Sbjct 8088928 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTA 8088987 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| || ||| | || ||||| |||||||||| ||||||| || Sbjct 8088988 CAACATCCAGAAAGAATCAACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 8089038 >seq1205 Length=14428146 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 1810568 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1810627 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| ||||| || || || || | ||||| Sbjct 1810628 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCA 1810686 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| |||| || ||||| |||||||| |||| |||||||| |||||||| Sbjct 1810687 GCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCTGACTACAA 1810746 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || |||||| | |||||||| | ||||| || Sbjct 1810747 CATCCAGAAGGAATCTACTCTGCATCTCGTGCTGCGCCTCAGAGGTGG 1810794 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| || || || || ||||| ||||||||| | || || ||| | Sbjct 1810336 AAAAATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCC 1810395 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | || | || |||| ||||| || || || || | || Sbjct 1810396 CAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGA 1810455 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| |||| || ||||| |||||||| || | ||| |||||| |||||| Sbjct 1810456 CCAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTCTCCGACTA 1810515 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| |||||| | || ||||| | || ||||| Sbjct 1810516 CAACATCCAGAAGGAATCTACTCTGCACCTTGTCCTGCG 1810554 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 1810796 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1810855 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||||||| ||||| || || || || | ||||| Sbjct 1810856 GACACCATTGAGAACG-TGAAGGCCAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCA 1810914 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| |||| || ||||| |||||||| || | ||| |||||| |||||||| Sbjct 1810915 GCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTCTCTGACTACAA 1810974 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| |||||| | || ||||| | || ||||| Sbjct 1810975 CATCCAGAAGGAATCTACTCTGCACCTTGTCCTGCG 1811010 >seq242 Length=156412533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| ||||||||| || ||||| ||||| | || | Sbjct 135808585 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATTAGGCCCCTCTTCT 135808644 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 135808645 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 135808704 Query 133037 CCACCA 133042 | |||| Sbjct 135808705 CAACCA 135808710 >seq458 Length=112617285 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | ||||| || || || ||||| || |||||||| ||| ||||| Sbjct 99184016 CACCTCCTCCGCCGTCCAGAAGGAGGCTTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 99183957 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || ||||| || || || || ||||||||||| || |||| |||||||||| Sbjct 99183956 GTACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTCC 99183902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499940869872640