Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq676 286 4e-72 seq1505 154 2e-32 >seq676 Length=62374962 Score = 286 bits (316), Expect = 4e-72 Identities = 1029/1597 (64%), Gaps = 32/1597 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| || || ||||| ||||| |||||||| || || Sbjct 54759934 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATACGGTCAATGTCGTCCTTGCT 54759993 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | |||||| ||||| ||||| || ||||| | ||||||| | ||| || | Sbjct 54759994 GAGGCGCCCCTTGTCATTGGTAATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCAC 54760053 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || || || |||| |||||||| ||||| | || || | || | || || || Sbjct 54760054 GGCGCTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGAC 54760113 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||||| ||||| | || || || |||| ||||| | || || || |||||||| | Sbjct 54760114 TCCCCTGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTATCCCT 54760173 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCG--CAGGTTGATTATCTT 6863 | | | | |||||||| || || | | | ||| | | ||||| | | Sbjct 54760174 TGTCATAGCCCTCTCACCTTCGTACACCTGGACCAGGACACTGTTCTGGTTGTCTGAGTA 54760233 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 | || | |||| | || || || | || || || || || | | || | | Sbjct 54760234 G----GTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTACGCTTGATGAGAG 54760289 Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983 ||||| | || || || |||| || || |||||||| || || ||||| || | Sbjct 54760290 CAGTCATCACTCCTCCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCA 54760349 Query 6984 ACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 || || || ||| || | || ||| | | ||| || ||||| || | || | Sbjct 54760350 GGAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGTACAGCAGCAC 54760409 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103 |||| || || |||||||||||||| || | || || || ||||| || || || ||| Sbjct 54760410 CGTAAGCCACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAAT 54760469 Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 || | || | || || || ||||| || || || ||||| |||| ||||| || | Sbjct 54760470 CCTGCAGCAGCTTCTGGATCTTGGGGATCCGGGTAGAGCCACCCACCAGCACGATCTCCT 54760529 Query 7164 TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 | | || || | ||| | || || || | || || || || |||| Sbjct 54760530 GAATCTGGCCCTTGTCAAGCTTGGCATCACGCAGAGCCTTCTCCACCGGCTCCAGGGTGC 54760589 Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283 |||||| | ||| | || ||||||||||| ||||| |||||||| || ||||| | Sbjct 54760590 CACGGAAAAGGTCAGCATTGAGCTCCTCAAAACGGGCACGAGTAATGGAGGTGTAGAAGT 54760649 Query 7284 CAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTC 7343 ||| ||| || | | || ||||| |||||| | | |||| | || | || | Sbjct 54760650 CAATGCCCTCAAACAGAGAGTCAATCTCAATGCTGGCCTGTGTGGAGGAGCTGAGGGTGC 54760709 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 ||||||| | |||||| ||||| || | || | | || ||| |||||| | ||| | Sbjct 54760710 GCTTTGCCCTCTCACAAGCCGTGCGCAGGCGCCTCACTGCTCGCTTGTTACCAGCAATGT 54760769 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 | ||| || || || || || ||||| ||||| | | | || || | Sbjct 54760770 CACGCTTGTGCTTGCGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAGT 54760829 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 | || |||||||| || ||||| || || || | || || ||||| || || | || | Sbjct 54760830 CCTCCCCACCCAAATGGGTATCGCCAGCAGTGGACTTTACCTCAAAAATCCCATCCTCGA 54760889 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 || | | | || |||||||| || || || ||||||||||| || || |||||| | | Sbjct 54760890 TGGTAAGGATGGAGACATCAAAAGTGCCCCCTCCCAGGTCAAAGATAAGCACGTTCTTCT 54760949 Query 7584 CGTC------GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | | | | ||||| || || || || |||||||| || || || || |||| Sbjct 54760950 CTCCAGCCCGGGTTCCCTTCTTGTCCAGGCCATAAGCGATAGCAGCTGCAGTGGGCTCAT 54761009 Query 7638 TAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 | || ||||| | ||| || ||||| | || || | || || || || || || || Sbjct 54761010 TGATGATACGCATCACA-TTGAGGCCTGTGATGGTGCCGGCGTCCTTGGTGGCCTGGCGC 54761068 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || || || ||||| ||||| || || | ||| || | | || || || ||| Sbjct 54761069 TGGGAGTCATTGAAGTATGCCGGCACTGTGATGACAGCATTCTGCACCTTGCACCCCAGA 54761128 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || || || || ||||| ||||| || ||||| || ||||| || | | | Sbjct 54761129 TAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG-GGAA 54761187 Query 7817 AACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 | || ||| | || || || | || || | | | |||| || || | || Sbjct 54761188 GAAGGTCTTCATCTCCCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CTCCCTC 54761241 Query 7876 GATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | ||| | | | ||||| ||||| || || ||| |||| | |||| Sbjct 54761242 ATTCACCACACGGAAAGGCCAATGCTTCATGTCCGACTGCACCGTGGGGTCATCATACTT 54761301 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | ||||| || ||||| |||||||| | || || |||||||||| ||| ||||| Sbjct 54761302 GCGGCCGATGAGGCGCTTGGCATCAAAGATGGTATTGGTGGGGTTCATTGCTACCTGGTT 54761361 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-G 8051 ||| || || |||||||| || || || || || || ||||| || || | |||| | Sbjct 54761362 CTTGGCAGCATCCCCGATGAGCCGCTCCGTA---TCGGTGAACGCCACATA-GCTGGGTG 54761417 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | || || || || || ||||| || || || || || | ||| || |||| || | Sbjct 54761418 TGGTGCGGTTACCCTGATCGTTGGCGATGATCTCCACCTTGCCGTGCTGGAAGACACCCA 54761477 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||| || ||||| || || | || || ||||| || Sbjct 54761478 CGCAAGAGTACGTGGTGCCCAGGTCGATGCCGATCGC 54761514 >seq1505 Length=8021379 Score = 154 bits (170), Expect = 2e-32 Identities = 358/540 (66%), Gaps = 0/540 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 ||||| ||||| || ||||| || ||||| || | || || || ||||| ||||| || Sbjct 3518153 GCCCCATATGCTACAGCCTCGTCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCGTTGAAG 3518212 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || || || || || ||||| || || || || || |||| ||||| Sbjct 3518213 AAGTCCTGCAGCAGTTTCTGGATCTTGGGGATGCGCGTGGAGCCCCCCACCAGCACGATG 3518272 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | ||| || || | ||| | ||| | || | || || || || |||| Sbjct 3518273 TCGTGGATCTGCGACTTGTCCAGCTTGGCGTCCCTCAGGGCCTTCTCCACGGGGTCCAGG 3518332 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||| ||| || ||||| || || || | ||| ||||| || ||| Sbjct 3518333 GTGCCCCGGAACAGGTCGGCGTTGAGCTCCTCGAAGCGAGCCCTGGTGATGGAGGTGTAG 3518392 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || | ||| || || | || || || || ||| | | || | | || || | Sbjct 3518393 AAGTCGATGCCCTCATAGAGGGAGTCGATCTCGATGCTGGCCTGGGTGGAGGAGGACAGG 3518452 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| |||||||| || || || || | || || | ||| ||| ||| || Sbjct 3518453 GTGCGCTTGGCGCGCTCGCAGGCGGTGCGCAGGCGGCGCACGGCGCGCTTGTTCTCGCTG 3518512 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || || || ||||| | |||||| | | | ||| Sbjct 3518513 ATGTCCTTCTTGTGCTTGCGCTTGAACTCGGCGATGAAGTGGTTCACCATGCGGTTGTCG 3518572 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||| ||| || ||||| || || | ||| || || ||||| || || Sbjct 3518573 AAGTCCTCCCCACCCAGGTGGGTGTCCCCTGCTGTGGATTTCACCTCGAAGATGCCATCT 3518632 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 || ||| | | | || || ||||| || ||||||||||| ||||||||||| |||||| Sbjct 3518633 TCGATGGTCAGGATGGACACGTCAAAGGTGCCACCACCCAGATCAAAAATGAGCACGTTC 3518692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634838288920640