Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq235 91.5 2e-13 seq458 84.2 3e-11 seq242 82.4 9e-11 >seq235 Length=1083483 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 ||||| || | || || || |||| |||| | ||| || || |||| |||| ||| Sbjct 698904 GTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 698963 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| ||||||| | |||||||||||||||||||| || || ||||| ||||| Sbjct 698964 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 699023 Query 106625 GACTTGAGAATTGCCTTCCA 106644 |||| || || || | ||| Sbjct 699024 GACTCGATGATGGCGTACCA 699043 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 ||||| || | || || || |||| |||| | || || || |||| |||| ||| Sbjct 695980 GTGTATTCCACGATCTCAGTGCACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGG 696039 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| ||||||| | |||||||||||||||||||| || || ||||| ||||| Sbjct 696040 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 696099 Query 106625 GACTTGAGAATTGCCTTCCA 106644 |||| || || || | ||| Sbjct 696100 GACTCGATGATGGCGTACCA 696119 >seq458 Length=112617285 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || |||||||||||||||||||| ||||| || || || ||||||||||| Sbjct 99187727 ATATTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTGCCTTCCAGAGAGATGTTTTCCAT 99187668 Query 117045 AAAGTCAAATGGATTCTTCGCGTT 117068 |||||||| ||||||| ||| || Sbjct 99187667 GAAGTCAAAAGGATTCTCCGCTTT 99187644 >seq242 Length=156412533 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||||| | |||||||||||| ||||| | || ||||| || |||| ||||| Sbjct 135808585 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATTAGGCCCCTCTTCT 135808644 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| |||| | ||||| ||| || || || || |||||||| || ||||| ||||| Sbjct 135808645 TCAGCCAAAATATAGCAGCA-AAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAG 135808703 Query 117412 GCAA 117415 |||| Sbjct 135808704 GCAA 135808707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589707225903040