Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1324 140 7e-28 seq1205 136 9e-27 >seq1324 Length=11587733 Score = 140 bits (154), Expect = 7e-28 Identities = 166/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| ||||| ||||| || || || ||||| |||| || || Sbjct 8089260 CTGAGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 8089201 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||||||| ||||||||||| || ||||| || | || |||||||| ||||||||| Sbjct 8089200 CGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCT 8089141 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || |||||| ||||| |||||||| ||| ||||| || Sbjct 8089140 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCG 8089084 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || |||| || || || || | ||||| Sbjct 8089083 AGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8089040 Score = 140 bits (154), Expect = 7e-28 Identities = 166/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| ||||| ||||| || || || ||||| |||| || || Sbjct 8091884 CTGAGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 8091825 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||||||| |||||||| || ||||| || || | || |||||||| ||||||||| Sbjct 8091824 CGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCT 8091765 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || ||| || ||||| |||||||| ||| || ||||| Sbjct 8091764 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACTTCC 8091708 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || ||||| | ||||| Sbjct 8091707 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8091664 Score = 134 bits (148), Expect = 3e-26 Identities = 160/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || ||||| || ||||||||||| || || ||||| |||| || || Sbjct 8091429 TCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGT 8091370 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || |||||||| |||||||| Sbjct 8091369 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCC 8091310 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || ||||| || || || ||| || || ||||||||||| ||| ||||| || Sbjct 8091309 CTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTC---ACTGGGCTCCACCTC 8091253 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||||| | ||||| || |||| || || || || Sbjct 8091252 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAA 8091217 Score = 129 bits (142), Expect = 1e-24 Identities = 165/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || ||||| ||||| || ||||| || || ||||| || | || || Sbjct 8089033 TCTCAGGCGCAGCACCAGGTGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGT 8088974 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||| || |||||||| || || ||||| || | || ||||| ||||| ||||| Sbjct 8088973 GCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCC 8088914 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || |||||| |||||||||||||| ||| ||||| || Sbjct 8088913 TTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 8088857 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || | ||||| || |||| || || || || | |||||| Sbjct 8088856 AAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATT 8088811 Score = 116 bits (128), Expect = 8e-21 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || ||||| || || || || ||||| || | || || Sbjct 8091656 CTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTG 8091597 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||| || ||||||||||| || || || || | || ||||||||||| || ||| Sbjct 8091596 CGCCCATCCTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATACCT 8091537 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || ||| || || || |||||||| ||| ||||| || Sbjct 8091536 TCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTGTC---ACTGGGCTCCACCTCG 8091480 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || |||| ||||| ||||| | ||||| Sbjct 8091479 AGAGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 8091436 Score = 107 bits (118), Expect = 4e-18 Identities = 129/170 (76%), Gaps = 8/170 (5%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAA--GAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 || || || ||||| |||| || |||| | ||||||||| ||||||||||| || |||| Sbjct 8089897 TTCTGGATGTTGTAGTCGGAAAAGGAGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGA 8089838 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | || | || || ||||||||||||||||| ||||| || || || |||||| |||| Sbjct 8089837 TCAG-CTCTGCTG-TCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 8089780 Query 195071 CAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 | ||||||| | || | ||||| || || || | ||||| || |||| Sbjct 8089779 CGATGGTGTCACTGAGC--TCCACCTCGAGAGTGATGGTCTTGCCGGTCA 8089732 >seq1205 Length=14428146 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| || || || || || ||||| || | || || | ||||||||| Sbjct 1811004 ACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGCCCATCTTCC 1810945 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || || | || ||||| ||||| |||||||| |||||||| Sbjct 1810944 AGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 1810885 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| ||||||||||||||||| ||| || || |||||||| | ||| Sbjct 1810884 ATTTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTC 1810828 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 1810827 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1810796 Score = 114 bits (126), Expect = 3e-20 Identities = 161/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || || || ||||| || || || || || ||||| || | || || Sbjct 1810789 TCTGAGGCGCAGCACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 1810730 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| |||||||| || || || || || | || ||||| ||||| ||||| Sbjct 1810729 GCGGCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCC 1810670 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || || ||||||||||||||||| ||| || || || Sbjct 1810669 TTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTC 1810613 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| | ||||| ||||||| || || || || | ||||| Sbjct 1810612 AAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1810568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108954271716632