Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1324 113 3e-20 seq1205 107 1e-18 >seq1324 Length=11587733 Score = 113 bits (124), Expect = 3e-20 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||| | || |||| ||| | ||| |||||||| ||||| ||||| || Sbjct 8091434 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 8091375 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | ||||||||| | || Sbjct 8091374 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 8091315 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| || || | | || | |||| || ||| || Sbjct 8091314 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACC 8091255 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGC 34979 || | ||| ||||| || || || || |||||||||||||||||| Sbjct 8091254 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGC 8091210 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 8089230 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAG 8089171 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | || |||||||| ||||| ||||| || Sbjct 8089170 ATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--AT 8089113 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || |||| || ||||| || || || || ||||||| Sbjct 8089112 TCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAGGGTCTTCA 8089053 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 8089052 CAAAGATCTGCAT 8089040 Score = 105 bits (116), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 8089003 TTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAA 8088944 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || |||||||| ||||| ||||| | Sbjct 8088943 GATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--A 8088886 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || || | || ||||| || || || || |||||| Sbjct 8088885 TTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTC 8088826 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 8088825 ACAAAGATCTGCAT 8088812 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| ||| ||||| ||||| ||||| || Sbjct 8091662 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 8091603 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | ||||||||| | || Sbjct 8091602 AGGGTGCGCCCATCCTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGAGGG 8091543 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| || || | | || | |||| || ||| || Sbjct 8091542 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 8091483 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || ||||| || || || || || ||||| ||||||||||| Sbjct 8091482 TCGAGAGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 8091436 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 8091854 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAA 8091795 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | || |||||||| ||||| || || || Sbjct 8091794 ATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--AT 8091737 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || |||||| || | ||| ||||| || || || || ||||||| Sbjct 8091736 TCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 8091677 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 8091676 CGAAGATCTGCAT 8091664 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 8089458 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAA 8089399 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || |||||||| ||||| || ||| Sbjct 8089398 ATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 8089339 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || |||||| || | ||| ||||| || || || || ||||| || Sbjct 8089338 TCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACG 8089279 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 8089278 AAGATCTGCAT 8089268 >seq1205 Length=14428146 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || | || |||||||| || || ||||| Sbjct 1810759 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAA 1810700 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || |||||||| ||||| ||| ||| Sbjct 1810699 AATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTT 1810640 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || |||||| || | ||| ||||| || || || || |||||||| Sbjct 1810639 CTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCAC 1810580 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 1810579 AAAGATCTGCAT 1810568 Score = 102 bits (112), Expect = 5e-17 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 1810531 TTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCAAA 1810472 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || |||||||| ||||| ||||| | Sbjct 1810471 AATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--A 1810414 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| || | ||| ||||| || || || || ||||| Sbjct 1810413 TTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTG 1810354 Query 34968 ACAAAGATCTGCATATT 34984 || ||||||||||| || Sbjct 1810353 ACGAAGATCTGCATTTT 1810337 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 1810987 TTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCAAA 1810928 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || |||||||| || || || ||| Sbjct 1810927 AATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATTTTGGCCTTCACGTT 1810868 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || |||||| || | ||| ||||| || || || || ||||| || Sbjct 1810867 CTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGAC 1810808 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 1810807 AAAGATCTGCAT 1810796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324486830714688