Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq458 120 3e-22 >seq458 Length=112617285 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| || | |||||||| | ||||||||| | Sbjct 99186508 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 99186449 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| || |||||||| | Sbjct 99186448 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 99186389 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 99186388 CTACTACGCGTTCTCC 99186373 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 19206 ATACATACG-CTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264 ||||| || ||| | || ||| |||| || | || || | | |||||||||||||| Sbjct 99184854 ATACAAACCTCTCCTTTGAATCCTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTG 99184795 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 |||| |||||||| || || ||||| || || || ||||| | |||||||| || |||| Sbjct 99184794 AATGTATATTTTCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTA 99184735 Query 19325 CTTC 19328 |||| Sbjct 99184734 CTTC 99184731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561848150149440