Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq242 122 7e-23 seq30835 118 9e-22 seq1684 87.8 1e-12 >seq242 Length=156412533 Score = 122 bits (134), Expect = 7e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 ||||| ||||| || || |||||||||||||| || || |||||||| || ||||| || Sbjct 107531404 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 107531463 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || |||||||| ||||| || || || | || || | Sbjct 107531464 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 107531523 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 ||||| ||||| || | || ||||||||||| | |||||| ||| Sbjct 107531524 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGG 107531568 Score = 113 bits (124), Expect = 4e-20 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| ||||||||||||||||| || ||||| ||||||| || Sbjct 107535048 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 107535107 Query 30210 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||||| || || ||||| ||| || ||| |||| || || | || || || || | Sbjct 107535108 ACCCTCCTCTCTGGTGCT-GAAACCTTGCTTATCCAGGAACTCACGCGACCCATTAGCAT 107535166 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||| ||||| || || || | ||||||||||||| ||||| || || Sbjct 107535167 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 107535215 Score = 104 bits (114), Expect = 2e-17 Identities = 121/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 |||| |||||||| ||||||||||||||||| || ||||| ||||||| || || || | Sbjct 107537127 TGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCGTCCT 107537186 Query 30218 CCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276 | || ||||| ||| | ||| |||| || || | || || || || ||||| ||| Sbjct 107537187 CTCTGGTGCT-GAAACGGTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAATC 107537245 Query 30277 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 || || || || | ||||||||||||| ||||| || || Sbjct 107537246 TTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 107537286 >seq30835 Length=9899 Score = 118 bits (130), Expect = 9e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 ||||| ||||| || || |||||||||||||| || || |||||||| || ||||| || Sbjct 3437 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 3378 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || |||| ||| ||||| || || || | || || | Sbjct 3377 ACTCCTAGTCCCATGTCTCCAGACCGCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 3318 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 ||||| ||||| || | || ||||||||||| | |||||| ||| Sbjct 3317 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGG 3273 >seq1684 Length=72861351 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || |||||||||||||| || | || || |||||| | | ||| | ||||| || || Sbjct 72301205 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGGA 72301146 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || ||||||||||||||||| | |||| || ||| Sbjct 72301145 ATGGAGAACCACGTTTTTCTACCCATTATCACTGCATTCTTTTTTCCT 72301098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408432860918408