Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq676 188 2e-43 >seq676 Length=62374962 Score = 188 bits (208), Expect = 2e-43 Identities = 306/427 (72%), Gaps = 10/427 (2%) Strand=Plus/Minus Query 42358 GTCAGGGAAGTTG-TGAAGTTCTGGGATATACCGCTCACCGTATTGCAGGTTGATATCAA 42416 |||||||||| || | || ||| |||||||| |||||| |||| ||||||||| |||| Sbjct 27656095 GTCAGGGAAGGTGGTAAAATTC-GGGATATATT-CTCACCATATTTCAGGTTGATGTCAA 27656038 Query 42417 CCCGGAGCTTGGACAGCCAAATGGTTATACGGTATGGGAAC-CAAAGGATATTCAGACGC 42475 || || | || || | | | |||| ||| || || | || ||| | Sbjct 27656037 CCTGGGGTCGGGGCATTCTATTTTTTATGTCTTATCATAAATCATTGTTTACTCACAACG 27655978 Query 42476 GAATGCCTGTTCTGAAGCCATTTATCGATATGGTAAAGAAATATGGCACTCCATACGTCG 42535 |||| |||| | || |||| ||| ||| |||| ||||| || ||||||||| | Sbjct 27655977 AAATGGGTGTTGT-AATTCATTG-TCGTAATG-TAAATAAATAAA-CAATCCATACGTTG 27655922 Query 42536 GCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTCACCAAATACTG-TGATGAC 42594 | ||||||| |||| |||||||||||| |||||||| |||| | || ||| ||| || Sbjct 27655921 TCTGCGCGTTATGCAGTGACAGATTAAAGCTCGTTCCGGTCACTATAT-CTGATGAAAAC 27655863 Query 42595 CATTTCGGGCGAGGGAATTACACCACGTGGATTGGCATCAGAGCTGATGAACCGAAGCGG 42654 | |||| || |||| ||||| |||||| || |||||| ||| |||| | | ||||| Sbjct 27655862 AAAATCGGCCGTGGGAGTTACATCACGTGCATAGGCATCTGAGGCGATGCGCTGGAGCGG 27655803 Query 42655 CTAAAGCCAAAGCCTGGAATCAGATATCTTGCTGAACTGTCAGACTTTGAGAAGGAAGAT 42714 ||| |||||| | ||||| || ||||| ||| || || |||| ||||||||||| | Sbjct 27655802 CTAGAGCCAAGTTCGGGAATTAGTTATCTGAGTGATCTCTCGGACTATGAGAAGGAAGTT 27655743 Query 42715 ATCCTCGCATGGTGGAAGCAACAACCATTCGATTTGCAAATACCGGAACATCTCGGTAAC 42774 ||||||| |||| |||||||||| || || || | || |||| |||||| ||| | Sbjct 27655742 ATCCTCGGATGGGGGAAGCAACATGCAGTCTATGGGAGAACGCCGGTCCATCTCTGTACC 27655683 Query 42775 TGCATAT 42781 ||||| Sbjct 27655682 ACCATAT 27655676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156980417295456