Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq235 132 9e-26 seq1684 116 7e-21 >seq235 Length=1083483 Score = 132 bits (146), Expect = 9e-26 Identities = 127/163 (78%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 ||||| |||| |||||| |||||||||||||||||| |||||||||||||||||| ||| Sbjct 695980 GTGTATTCCACGATCTCAGTGCACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGG 696039 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||||||||||| || ||||| |||| Sbjct 696040 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 696099 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 696100 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 696142 Score = 132 bits (146), Expect = 9e-26 Identities = 127/163 (78%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 ||||| |||| |||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 698904 GTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 698963 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||||||||||| || ||||| |||| Sbjct 698964 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 699023 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 699024 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 699066 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || || ||||||||||| | ||| | ||| ||||||||||||||| Sbjct 693128 CTGGAACTCCCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 693187 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| ||||| |||||| ||| || |||||||| | | ||||| || Sbjct 693188 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTTGGCATGGGGGAGATGAGGAGGCT 693247 Query 213038 GTTCCTCACTCCGT 213051 ||||||||| |||| Sbjct 693248 GTTCCTCACACCGT 693261 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || || ||||||||||| | ||| | ||| ||||||||||||||| Sbjct 689240 CTGGAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 689299 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| ||||| |||||| ||| || |||||||| | | ||||| || Sbjct 689300 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTTGGCATGGGGGAGATGAGGAGGCT 689359 Query 213038 GTTCCTCACTCC 213049 |||||| || || Sbjct 689360 GTTCCTGACACC 689371 Score = 93.3 bits (102), Expect = 8e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 |||||||||||| |||||||| ||||| | ||||||| || ||||| | | ||| Sbjct 690983 GTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCCCTGTCTGCAGCCATCTTCAGGATGGT 691042 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGC-CGG 212814 | | ||||||| ||||||||| |||||| ||| | || ||||| || ||||| | | | Sbjct 691043 TTTTTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATC-GGGAATCTCAG 691101 Query 212815 GGATGTTCTG 212824 |||||||||| Sbjct 691102 GGATGTTCTG 691111 Score = 93.3 bits (102), Expect = 8e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||| || || |||| ||| || || |||||||||||||| | | | Sbjct 699927 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGC 699986 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || || | ||| || || || || || |||||||||||| |||||| ||| Sbjct 699987 TCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCATGGC 700046 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 700047 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 700077 >seq1684 Length=72861351 Score = 116 bits (128), Expect = 7e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||||||| ||||||| |||||||||||||| |||||||| ||||| || ||||||||||| Sbjct 3626309 CTTGAGCGCCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCGCCGGCGGCA 3626250 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| || | |||||| || || | ||| || || || || | || |||||| Sbjct 3626249 CTTGGAGGCGGCGATGCGGTTTCGCAGCCGCTTGCGCTCGGCTTTCAGCCGCTCCTGGCT 3626190 Query 241609 CTCCATGTCGATCGGAGAC 241627 |||| ||| | ||| ||| Sbjct 3626189 CTCCGCGTCCAGCGGCGAC 3626171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931100848240640