Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq818 84.2 6e-12 >seq818 Length=39844632 Score = 84.2 bits (92), Expect = 6e-12 Identities = 122/163 (75%), Gaps = 7/163 (4%) Strand=Plus/Plus Query 11895 GAGAGGGAAGTCATGAAAAAACTAACCTTTGAAATT-CGATCTCCAGCACATCAGCAAAA 11953 ||||||||| |||||| |||||||| | || ||| ||||||||| |||||| | | | Sbjct 1526918 GAGAGGGAAATCATGATCCAACTAACCGTAGAGATTTCGATCTCCACAACATCAACGACA 1526977 Query 11954 CGCT-ATTCACGCGGTACAGC-AAATTCTTCCAGACCCAACCAA-ACCAATCGTAGTAAC 12010 |||| | |||||| ||||||| | || ||| | || | || ||| || |||||| ||| Sbjct 1526978 CGCTAAATCACGCAGTACAGCTAGATCCTTACTGATCTAATCAACACAGATCGTA-TAAG 1527036 Query 12011 CA-TTCAGGAACGCAACCGCAGCTTAGACCAAAATCGGAAGCT 12052 || |||| ||| | || |||||||| | ||| | |||||| Sbjct 1527037 CATTTCATGAA-GGTACTGCAGCTTAAATCAATACACGAAGCT 1527078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126689766662016