Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_019706.1 Length=42780 Score E Sequences producing significant alignments: (Bits) Value seq818 127 6e-25 seq24970 114 4e-21 >seq818 Length=39844632 Score = 127 bits (140), Expect = 6e-25 Identities = 145/184 (79%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 36515 CAGGCCTGCTGGTAATCGCAGGCCTTT-TTATTTGGGGGAGAGGGAAGTCATGAAAAAAC 36573 |||| |||||| ||||| || |||||| ||| ||||||||||||||| |||||| ||| Sbjct 1526880 CAGGGCTGCTGATAATCCCATGCCTTTATTAATTGGGGGAGAGGGAAATCATGATCCAAC 1526939 Query 36574 TAACCTTTGA-AATTCGATCTCCAGCACATCAGCAAAACGCT-ATTCACGCAGTACAGC- 36630 ||||| | || | ||||||||||| |||||| | | ||||| | |||||||||||||| Sbjct 1526940 TAACCGTAGAGATTTCGATCTCCACAACATCAACGACACGCTAAATCACGCAGTACAGCT 1526999 Query 36631 AAATCCTTCCAGACCCAACCAA-ACCAATCGTAGTAACCA-TTCAGGAACGCAACCGCAG 36688 | |||||| | || | || ||| || |||||| ||| || |||| ||| | || |||| Sbjct 1527000 AGATCCTTACTGATCTAATCAACACAGATCGTA-TAAGCATTTCATGAA-GGTACTGCAG 1527057 Query 36689 CTTA 36692 |||| Sbjct 1527058 CTTA 1527061 >seq24970 Length=6292 Score = 114 bits (126), Expect = 4e-21 Identities = 128/165 (78%), Gaps = 7/165 (4%) Strand=Plus/Minus Query 30951 TTTATTTTCTGGCGACCAACACAAGTCACACCCATTTCACTGCGTGGCTTGCTGTACCAT 31010 || ||||||||||| |||| ||||| | || ||| | ||||||| ||||||| Sbjct 4811 TTAATTTTCTGGCGTCCAATGCAAGTTATGCCGCGTTC---GTCAGGCTTGCAGTACCAT 4755 Query 31011 GTGCGCTGATTC-TTGCGCTCAATACGTTGCAGGTTGCTTTCAATCTGTTCGTGGTATTC 31069 |||||||||||| ||||||| |||| |||| |||| |||| ||||||| || | |||| Sbjct 4754 GTGCGCTGATTCTTTGCGCTATATACACTGCAAGTTGTTTTC-ATCTGTTTGTTGGATTC 4696 Query 31070 AGCCAGCACCGTAAGGTCTATCGGATTCAGTGCGCTTTCTACTCG 31114 |||||| | |||| |||||| |||| ||||||| ||| ||||| Sbjct 4695 TGCCAGCCCTGTAA-GTCTATTCGATTTAGTGCGC-TTCCACTCG 4653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136714148825184