Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_019714.1 Length=39026 Score E Sequences producing significant alignments: (Bits) Value seq24970 172 1e-38 seq458 104 6e-18 seq818 86.0 2e-12 >seq24970 Length=6292 Score = 172 bits (190), Expect = 1e-38 Identities = 155/188 (82%), Gaps = 5/188 (3%) Strand=Plus/Minus Query 26398 CTAAATAAGTGATA-TAGATTTACCTTTAATTTTCTGGCGTCCTCTGCATGTTATGCCGC 26456 ||||||||| || | | |||| | ||||||||||||||||| |||| |||||||||| Sbjct 4837 CTAAATAAGAGAGAATCTATTTTCGCTTAATTTTCTGGCGTCCAATGCAAGTTATGCCGC 4778 Query 26457 GTTCGCCAGGCTTGCTGTACCATGTGCGCTGATTC-TTGCGCTCAATACGTTGCAGGTTG 26515 ||||| ||||||||| ||||||||||||||||||| ||||||| |||| |||| |||| Sbjct 4777 GTTCGTCAGGCTTGCAGTACCATGTGCGCTGATTCTTTGCGCTATATACACTGCAAGTTG 4718 Query 26516 CTTTCAATCTGTTCGTGGTATTCAGCCAGCACCGTAAGGTCTATCGGATTCAGTGCGCTT 26575 |||| ||||||| || | |||| |||||| | |||| |||||| |||| ||||||| | Sbjct 4717 TTTTC-ATCTGTTTGTTGGATTCTGCCAGCCCTGTAA-GTCTATTCGATTTAGTGCGC-T 4661 Query 26576 TCTACTCG 26583 || ||||| Sbjct 4660 TCCACTCG 4653 >seq458 Length=112617285 Score = 104 bits (114), Expect = 6e-18 Identities = 94/113 (83%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 28541 CCCGCTCTTACACATCCCAGCCCTGAAAAAGGGCATCAAATTAAACCACACCTATGGTGT 28600 |||||||||| |||| ||| ||| || |||||||||| | ||| || ||||||| || | Sbjct 44870147 CCCGCTCTTA-ACATTCCACCCCAGATAAAGGGCATCTA-TTATACTACACCTAGGG-GC 44870091 Query 28601 ATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATACTTACAT 28653 ||||||||||||||||| |||| ||| | || |||| || ||||||||||||| Sbjct 44870090 ATGCATTTATTTGCATATATTC-ATCGAGTGCTATCGAATGAAATACTTACAT 44870039 >seq818 Length=39844632 Score = 86.0 bits (94), Expect = 2e-12 Identities = 112/146 (77%), Gaps = 7/146 (5%) Strand=Plus/Plus Query 31572 GAGAGGGAAGTCATGAAAAAACTAACCTTTGAAATT-CGATCTCCAGCACATCAGCAAAA 31630 ||||||||| |||||| |||||||| | || ||| ||||||||| |||||| | | | Sbjct 1526918 GAGAGGGAAATCATGATCCAACTAACCGTAGAGATTTCGATCTCCACAACATCAACGACA 1526977 Query 31631 CGCT-ATTCACGCGGTACAGC-AAATCCTTCCAGACCCAACCAA-ACCAATCGTAGTAAC 31687 |||| | |||||| ||||||| | |||||| | || | || ||| || |||||| ||| Sbjct 1526978 CGCTAAATCACGCAGTACAGCTAGATCCTTACTGATCTAATCAACACAGATCGTA-TAAG 1527036 Query 31688 CA-TTCAGGAACGCAACCGCAGCTTA 31712 || |||| ||| | || |||||||| Sbjct 1527037 CATTTCATGAA-GGTACTGCAGCTTA 1527061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124706640643776