Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq458 168 2e-37 seq24970 120 8e-23 >seq458 Length=112617285 Score = 168 bits (186), Expect = 2e-37 Identities = 179/223 (80%), Gaps = 11/223 (5%) Strand=Plus/Minus Query 30743 CCCGCTCTTACACATCCCAGCCCTGAAAAAGGGCATCAAATTAAACCACACCTATGGTGT 30802 |||||||||| |||| ||| ||| || |||||||||| | ||| || ||||||| || | Sbjct 44870147 CCCGCTCTTA-ACATTCCACCCCAGATAAAGGGCATCTA-TTATACTACACCTAGGG-GC 44870091 Query 30803 ATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATACTTACATATGGTTC 30862 ||||||||||||||||| ||||| || | || |||| || ||||||||||||| ||| | Sbjct 44870090 ATGCATTTATTTGCATATATTCA-TCGAGTGCTATCGAATGAAATACTTACATTAGGTGC 44870032 Query 30863 GTGCAAACAAACGCAACGAGGCTCTACGAATCGAGAGTGCGTTGCTTAACAAAATCGCAA 30922 ||| |||| |||||||||| ||||| | |||||| | ||||| ||| || | ||| || Sbjct 44870031 GTGTAAAC-AACGCAACGATGCTCT-CAAATCGACA-TGCGTAGCTATAC-AGATC-CAC 44869977 Query 30923 TGCTTGGAACTGAGAAGACAGCGGAAGCTGTGGGAGTTGATAA 30965 ||||||||||||| ||||||||| || ||| | | |||||| Sbjct 44869976 TGCTTGGAACTGATAAGACAGCG--AGTCGTGTGCGATGATAA 44869936 >seq24970 Length=6292 Score = 120 bits (132), Expect = 8e-23 Identities = 129/165 (78%), Gaps = 7/165 (4%) Strand=Plus/Minus Query 28622 TTCATTTTCTGGCGACCAACACAAGTCACACCCATTTCACTGCGTGGCTTGCTGTACCAT 28681 || ||||||||||| |||| ||||| | || ||| | ||||||| ||||||| Sbjct 4811 TTAATTTTCTGGCGTCCAATGCAAGTTATGCCGCGTTC---GTCAGGCTTGCAGTACCAT 4755 Query 28682 GTGCGCTGATTC-TTGCGCTCAATACGTTGCAGGTTGCTTTCAATCTGTTCGTGGTATTC 28740 |||||||||||| ||||||| |||| |||| |||| |||| ||||||| || | |||| Sbjct 4754 GTGCGCTGATTCTTTGCGCTATATACACTGCAAGTTGTTTTC-ATCTGTTTGTTGGATTC 4696 Query 28741 AGCCAGCACTGTAAGGTCTATCGGATTCAGTGCGCTTTCTACTCG 28785 |||||| |||||| |||||| |||| ||||||| ||| ||||| Sbjct 4695 TGCCAGCCCTGTAA-GTCTATTCGATTTAGTGCGC-TTCCACTCG 4653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132709513704480