Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_019767.1 Length=40155 Score E Sequences producing significant alignments: (Bits) Value seq458 260 4e-65 seq24970 120 8e-23 >seq458 Length=112617285 Score = 260 bits (288), Expect = 4e-65 Identities = 254/314 (81%), Gaps = 11/314 (4%) Strand=Plus/Minus Query 29506 ACAACGCATAACCCTGAAAGATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGA 29565 |||||||| |||||||| || |||||| || |||||| ||| | | | ||| |||| | Sbjct 44870341 ACAACGCAATACCCTGAA-GAAAATGCAAGGCTCTTTGGTCAATCTAGG-CAGTTAAACA 44870284 Query 29566 TCTCGGCGTATATCAAAGCGCGATCAACAAGGCCATTCATGCAGGCCGAAAGAttttttt 29625 ||||| |||||| ||||||||| |||| ||||||||||||||||| |||| |||| Sbjct 44870283 -CTCGGGCAATATCACAGCGCGATCTTAAAGGTCATTCATGCAGGCCGAATGATTGTTTT 44870225 Query 29626 AACTATAAACGCTGATGGAAGCGTTTATGCGGAAGAGGTAAAGCCCTTCCCGAGTAACaa 29685 |||||| |||||||| | ||| ||||||||| || |||||| | ||||||| || | Sbjct 44870224 -ACTATAGGCGCTGATGCAGGCGGTTATGCGGAGGACGTAAAGTCATTCCCGACTA--CA 44870168 Query 29686 aaaaaCAACAGCATAAATAACCCCGCTCTTACACATTCCAGCCCTGAAAAAGGGCATCAA 29745 | |||| ||||||| |||||||||||||||| |||||||| ||| || |||||||||| Sbjct 44870167 ACAAACTACAGCAT-AATAACCCCGCTCTTA-ACATTCCACCCCAGATAAAGGGCATC-T 44870111 Query 29746 ATTAAACCACACCTATGGTGTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAA 29805 |||| || ||||||| || | ||||||||||||||||| |||| ||| | || |||| || Sbjct 44870110 ATTATACTACACCTA-GGGGCATGCATTTATTTGCATATATTC-ATCGAGTGCTATCGAA 44870053 Query 29806 GGAAATACTTACAT 29819 ||||||||||||| Sbjct 44870052 TGAAATACTTACAT 44870039 >seq24970 Length=6292 Score = 120 bits (132), Expect = 8e-23 Identities = 129/165 (78%), Gaps = 7/165 (4%) Strand=Plus/Minus Query 26839 TTCATTTTCTGGCGACCAACACAAGTCACACCCATTTCACTGCGTGGCTTGCTGTACCAT 26898 || ||||||||||| |||| ||||| | || ||| | ||||||| ||||||| Sbjct 4811 TTAATTTTCTGGCGTCCAATGCAAGTTATGCCGCGTTC---GTCAGGCTTGCAGTACCAT 4755 Query 26899 GTGCGCTGATTC-TTGCGCTCAATACGCTGCAGGTTGCTTTCAATCTGTTCGTGGTATTC 26957 |||||||||||| ||||||| |||| ||||| |||| |||| ||||||| || | |||| Sbjct 4754 GTGCGCTGATTCTTTGCGCTATATACACTGCAAGTTGTTTTC-ATCTGTTTGTTGGATTC 4696 Query 26958 AGCCAGCACCGTAAGGTCTATCGGATTCAGTGCGCTTTCTACTCG 27002 |||||| | |||| |||||| |||| ||||||| ||| ||||| Sbjct 4695 TGCCAGCCCTGTAA-GTCTATTCGATTTAGTGCGC-TTCCACTCG 4653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128317849151184