Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_019769.1 Length=38964 Score E Sequences producing significant alignments: (Bits) Value seq458 260 3e-65 seq818 127 5e-25 seq24970 114 3e-21 >seq458 Length=112617285 Score = 260 bits (288), Expect = 3e-65 Identities = 254/314 (81%), Gaps = 11/314 (4%) Strand=Plus/Minus Query 27990 ACAACGCATAACCCTGAAAGATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGA 28049 |||||||| |||||||| || |||||| || |||||| ||| | | | ||| |||| | Sbjct 44870341 ACAACGCAATACCCTGAA-GAAAATGCAAGGCTCTTTGGTCAATCTAGG-CAGTTAAACA 44870284 Query 28050 TCTCGGCGTATATCAAAGCGCGATCAACAAGGCCATTCATGCAGGCCGAAAGAttttttt 28109 ||||| |||||| ||||||||| |||| ||||||||||||||||| |||| |||| Sbjct 44870283 -CTCGGGCAATATCACAGCGCGATCTTAAAGGTCATTCATGCAGGCCGAATGATTGTTTT 44870225 Query 28110 AACTATAAACGCTGATGGAAGCGTTTATGCGGAAGAGGTAAAGCCCTTCCCGAGTAACaa 28169 |||||| |||||||| | ||| ||||||||| || |||||| | ||||||| || | Sbjct 44870224 -ACTATAGGCGCTGATGCAGGCGGTTATGCGGAGGACGTAAAGTCATTCCCGACTA--CA 44870168 Query 28170 aaaaaCAACAGCATAAATAACCCCGCTCTTACACATTCCAGCCCTGAAAAAGGGCATCAA 28229 | |||| ||||||| |||||||||||||||| |||||||| ||| || |||||||||| Sbjct 44870167 ACAAACTACAGCAT-AATAACCCCGCTCTTA-ACATTCCACCCCAGATAAAGGGCATC-T 44870111 Query 28230 ATTAAACCACACCTATGGTGTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAA 28289 |||| || ||||||| || | ||||||||||||||||| |||| ||| | || |||| || Sbjct 44870110 ATTATACTACACCTA-GGGGCATGCATTTATTTGCATATATTC-ATCGAGTGCTATCGAA 44870053 Query 28290 GGAAATACTTACAT 28303 ||||||||||||| Sbjct 44870052 TGAAATACTTACAT 44870039 >seq818 Length=39844632 Score = 127 bits (140), Expect = 5e-25 Identities = 151/193 (78%), Gaps = 9/193 (5%) Strand=Plus/Plus Query 31101 GCTAATAA-CAGGCCTGCTGGTAATCGCAGGCCTTT-TTATTTGGGGGAGAGGGAAGTCA 31158 || ||||| |||| |||||| ||||| || |||||| ||| ||||||||||||||| ||| Sbjct 1526871 GCCAATAAGCAGGGCTGCTGATAATCCCATGCCTTTATTAATTGGGGGAGAGGGAAATCA 1526930 Query 31159 TGAAAAAACTAATCTTTGA-AATTCGATCTCCAGTACATCAGCAAAACGCT-ATTCACGC 31216 ||| |||||| | | || | ||||||||||| |||||| | | ||||| | |||||| Sbjct 1526931 TGATCCAACTAACCGTAGAGATTTCGATCTCCACAACATCAACGACACGCTAAATCACGC 1526990 Query 31217 AGTACAGC-AAATCCTTCCAGACCCAACCAA-ACCAATCGTAGTAACCA-TTCAGGAACG 31273 |||||||| | |||||| | || | || ||| || |||||| ||| || |||| ||| | Sbjct 1526991 AGTACAGCTAGATCCTTACTGATCTAATCAACACAGATCGTA-TAAGCATTTCATGAA-G 1527048 Query 31274 CAACCGCAGCTTA 31286 || |||||||| Sbjct 1527049 GTACTGCAGCTTA 1527061 >seq24970 Length=6292 Score = 114 bits (126), Expect = 3e-21 Identities = 128/165 (78%), Gaps = 7/165 (4%) Strand=Plus/Minus Query 25332 TTCATTTTCTGGCGACCAACACAAGTCACACCCATTTCACTGCGTGGCTTGCTGTACCAT 25391 || ||||||||||| |||| ||||| | || ||| | ||||||| ||||||| Sbjct 4811 TTAATTTTCTGGCGTCCAATGCAAGTTATGCCGCGTTC---GTCAGGCTTGCAGTACCAT 4755 Query 25392 GTGCGCTGATTC-TTGCGCTCAATACGTTGCAGGTTGCTTTCAATCTGTTCGTGGTATTC 25450 |||||||||||| ||||||| |||| |||| |||| |||| ||||||| || | |||| Sbjct 4754 GTGCGCTGATTCTTTGCGCTATATACACTGCAAGTTGTTTTC-ATCTGTTTGTTGGATTC 4696 Query 25451 AGCCAGCACCGTAAGGTCTATCGGATTCAGTGCGCTGTCTACTCG 25495 |||||| | |||| |||||| |||| |||||||| || ||||| Sbjct 4695 TGCCAGCCCTGTAA-GTCTATTCGATTTAGTGCGCT-TCCACTCG 4653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124508328041952