Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq242 154 4e-33 >seq242 Length=156412533 Score = 154 bits (170), Expect = 4e-33 Identities = 229/321 (71%), Gaps = 3/321 (1%) Strand=Plus/Minus Query 11875 TAGATAATCGGCGACTCGGTTACCTGAACGCCGGCAGTAAATTCAAACAGGGCTCTTGCG 11934 ||||| ||||| || || || || || ||||||| ||| ||||| ||||||| | | | Sbjct 113594086 TAGATGATCGGGGATTCAGTAACATGCACGCCGGAAGTGAATTCTAACAGGGTTAAGGAG 113594027 Query 11935 TCATCCTCGTATTGTTTGCCCCATGCCAGAGCCCTGGCATTAACTTCAGGAGCTACGCCG 11994 || | || ||| ||| | | || |||| | | | || ||| | | |||| || ||| Sbjct 113594026 TCGTTCTAGTACTGTATTCTGCAGCCCAGTGGCTTAGCGTTAGATCC-GGAGTCACACCG 113593968 Query 11995 GTACACACCTCAGCGAGAAGGGTGTGGAAGTAAGACATCTTCATGTCCGGCCATTTTTTA 12054 | | || ||||| || |||||||||||||| ||||| |||||||| | ||| || || Sbjct 113593967 GCGCTAACGTCAGCAAGCAGGGTGTGGAAGTAGGACAT-TTCATGTCAGTCCAGTTCTTT 113593909 Query 12055 CCTGAGCGTGGTTTTGATATGACGTTATGAACATCTGATGCGGTGATAAC-TCCGAGGCG 12113 || ||||| || || |||| ||||| |||| ||||| ||| |||| || | |||| || Sbjct 113593908 CCGGAGCGGGGCGTTCATATCACGTTGTGAATCTCTGAAGCGTTGATCACATACGAGCCG 113593849 Query 12114 CAGCCTCTGCCACGCCTCATCTCCCTGTTCGACCGTGAGCACATCTATCCCTGTGCGCTC 12173 | | |||||||| ||||| | ||||||||| | |||||| |||| || || Sbjct 113593848 TAATTTATGCCACGCATCATCCCGCTGTTCGACAGCTGTCACATCGATCCTCGTACGTAG 113593789 Query 12174 AAGGATGATTGCGGGAGTCAT 12194 | ||| || | |||||||| Sbjct 113593788 CATGATCATGTCTGGAGTCAT 113593768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152166538815696