Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1684 230 3e-55 seq965 143 3e-29 >seq1684 Length=72861351 Score = 230 bits (254), Expect = 3e-55 Identities = 657/1003 (66%), Gaps = 8/1003 (1%) Strand=Plus/Plus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | |||| |||| || || |||| |||| || || || ||| || Sbjct 55216676 AGATACAGAGCTTTGTGCCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCGACA 55216735 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || |||||| ||||| || || | ||||| ||| |||| ||||||| || |||| Sbjct 55216736 TCAGTGTCGAACTTATTAGCAAATAAGTGGTG---GTTTCGTAGCATCCAGTTCAAGTCT 55216792 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || || || || ||||| || || ||||| || || |||| || ||||| | || Sbjct 55216793 CCTACTCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGTGCA 55216852 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 ||||| | ||| |||||||| |||| ||||| || ||||||||||| | || | |||| Sbjct 55216853 CCTTTGGACACATCACCTTCAAAGTATTGCCATTTGACAAACCTGGCCAGTGCATTCATG 55216912 Query 160272 TCGGAGGTGTCGTATTTGT-ACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTG 160330 || || || || |||| || | | ||| ||||| ||||| | || || | ||| Sbjct 55216913 TCAGAAACATCATACTTGTCACTGGAAGAAAAC-GCACCTGGAACTTCAGGGATTCTCTG 55216971 Query 160331 TAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTC 160390 | || |||||||||| || ||||||||||| || || || | ||| || ||||||| Sbjct 55216972 AATTGTTGCCCACAGGTACTCATCGGGGCTGTAAGTATCTTTTGCCCACTCAATGAACTT 55217031 Query 160391 TCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGC 160450 ||| |||| || || | || || ||| | || ||||| || || Sbjct 55217032 AAGTATTTTGCTGTTTTCTAGTACATATTCTACAAAGCTCCTGCTAACTACAAAATAGGC 55217091 Query 160451 GCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGA 160510 ||||| || || | || | | ||| || | |||||| || ||||| Sbjct 55217092 ACTGCCAGAAAAAACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTT 55217151 Query 160511 CACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCAT 160570 | || | | | | | || | || |||||||| || || | ||||| Sbjct 55217152 TATTTTACCGTCAATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCAT 55217211 Query 160571 GCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAG 160630 ||| || || | ||||| |||| | || | ||| | | || || || || | Sbjct 55217212 TTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGGGCTTTTAATTTCTCTACTATTTCCTG 55217271 Query 160631 GTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCT 160690 ||| ||||| | |||||||| |||| || | |||||| | ||| ||||| || | || Sbjct 55217272 GTTGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGGTATTTCCAGTTTGAACT 55217331 Query 160691 CAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTA 160750 || || || ||||||| ||||| ||||||||||| | |||||| ||||| || Sbjct 55217332 TCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATA 55217391 Query 160751 CACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCAC 160810 || || |||||| | |||| | |||||| ||||| ||||| || || |||||| Sbjct 55217392 TACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTT 55217451 Query 160811 CACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCT 160869 ||| | ||| || || || | | |||| ||| || || | |||||| | |||| Sbjct 55217452 CACAG-CAGCAAAAAATGATTCTGGAGACTTTTTGTCTACATGAATGCAATAAAAATTCT 55217510 Query 160870 GAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGA 160929 | || || ||||| | || || | || |||| |||||| || || |||| | ||| | Sbjct 55217511 GCGGAGCATAGATTGATCTTAGAAGTCTATCGAGCATCTCAATTTTGTGATAAACCACAA 55217570 Query 160930 TAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTC 160989 | ||||| || || ||||| || | || ||| || || | | | | ||| || | Sbjct 55217571 TTGAGTAAGCAATTGGAAATTCTGCTTCTTCGTTGCTGAGAGGTTCCATAATGTATTTCC 55217630 Query 160990 GCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 |||||| | || | |||| || |||||||| ||||| Sbjct 55217631 TAGTCTTGGTGAAGGAGGCACAGTCTGCAGTCATGTTAATATA 55217673 >seq965 Length=20806668 Score = 143 bits (158), Expect = 3e-29 Identities = 239/345 (69%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||| | || |||||||| |||| ||| |||| || || |||||| | Sbjct 5049983 TGTGGCGCAGGTACTCCTCCAGACACTGGATGGCCGCATCGTCCACCTCGGGGTCGAACT 5050042 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || |||||||| | ||| || |||||| ||||||| || |||| | | Sbjct 5050043 TGTTGGCCAAGAGATGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCACCCCGTAGA 5050099 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||| ||| || ||| |||| |||| |||||||| | || || || | || Sbjct 5050100 TGCAGATGGAGCGCTGGTGGCGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTTGCTGATGT 5050159 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 |||| || ||||| |||||| || | | || | || | |||||| ||| | | Sbjct 5050160 CACCCTCCAGGTACTCCCACTTGACCAGGCGGGGAAGGGCGTTCATGTCCGAGAGCTGGA 5050219 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| | |||||| | | || || ||||| ||||| || | ||||||||||| | Sbjct 5050220 ACTTGTCGCTGAGGGGAGTGCCCCCCGGCACGCCCGGCATGCGGTTCAGGGTGGCCCAGA 5050279 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 || ||||| |||||||| ||||||| ||||| || | ||||| Sbjct 5050280 CGTACTCGTCAGGGCTGTAGCTGTCCTTGGACCACTCGAGGAACT 5050324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576951543456960