Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq458 84.2 3e-11 seq242 82.4 9e-11 >seq458 Length=112617285 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 65434 AACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTC 65493 || ||| ||||||| |||||||| ||||||||||| || || || ||||| |||||| Sbjct 99187644 AAAGCGGAGAATCCTTTTGACTTCATGGAAAACATCTCTCTGGAAGGCAAGACAAACTTC 99187703 Query 65494 TTTGAGAAGCGAGTTGGGGACTAT 65517 |||||||||||||| || || ||| Sbjct 99187704 TTTGAGAAGCGAGTAGGTGAATAT 99187727 >seq242 Length=156412533 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGG 65145 |||| ||||| ||||| || |||||||| || || || || ||| ||||| | |||| Sbjct 135808707 TTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTT-TGCTGCTATATTTTGG 135808649 Query 65146 TTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGAT 65205 |||||||| |||| || ||||| || | ||||| |||||||||||| | ||||| Sbjct 135808648 CTGAAGAAGAGGGGCCTAATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 135808589 Query 65206 GAGG 65209 |||| Sbjct 135808588 GAGG 135808585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596292970676480