Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq242 141 3e-29 >seq242 Length=156412533 Score = 141 bits (156), Expect = 3e-29 Identities = 243/349 (70%), Gaps = 3/349 (1%) Strand=Plus/Minus Query 28289 GGTGCGCATGCTCTCGTCACGGAACAAGATCGGAGACTCCGTGACTTTCACGTCAGTGGT 28348 ||| ||||| || || || || | | |||||| || || || || | |||| | | || Sbjct 113594108 GGTACGCATACTATCATCGCGATAGATGATCGGGGATTCAGTAACATGCACGCCGGAAGT 113594049 Query 28349 GAACTCGAAGAGGGTGCGGGCGTCTTCTTCGTACTGCTTGCCCCAGGCCAGCGCCTTGGC 28408 ||| || || ||||| || ||| | | |||||| | | ||| |||| | ||| || Sbjct 113594048 GAATTCTAACAGGGTTAAGGAGTCGTTCTAGTACTGTATTCTGCAGCCCAGTGGCTTAGC 113593989 Query 28409 GTTAACCTCTGGCGCTACACCGGTGCATACCTCGGCGAGCAAGGTGTGGAAGTAGGACAT 28468 |||| || || | ||||||| || || || || |||| ||||||||||||||||| Sbjct 113593988 GTTAGA-TCCGGAGTCACACCGGCGCTAACGTCAGCAAGCAGGGTGTGGAAGTAGGACA- 113593931 Query 28469 TTTCATGTCTGTCCATTTGCTGCCAGATCGAGGCTTGGAAATGACGTTGTGAGCGTCAGA 28528 ||||||||| ||||| || | || || || ||| | | || ||||||||| || || Sbjct 113593930 TTTCATGTCAGTCCAGTTCTTTCCGGAGCGGGGCGTTCATATCACGTTGTGAATCTCTGA 113593871 Query 28529 GGCAGTAATAAC-TCCGAGCCTTAATTTGGCCCATGCTTCATCACCTTGCTCTACGGTGG 28587 || | || || | |||||| |||||| ||| || ||||| | || || || | | Sbjct 113593870 AGCGTTGATCACATACGAGCCGTAATTTATGCCACGCATCATCCCGCTGTTCGACAGCTG 113593811 Query 28588 ACACATCTATGCCGGTCCGGGCCAGGATAATTTCTGGTGTCATGCTGCC 28636 |||||| || | || || || ||| || ||||| |||||| |||| Sbjct 113593810 TCACATCGATCCTCGTACGTAGCATGATCATGTCTGGAGTCATGATGCC 113593762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147493398311424