Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1324 132 4e-26 seq1205 109 5e-19 >seq1324 Length=11587733 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || ||||| || || || || ||||| || || ||| Sbjct 8091435 GATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACTCTCGAGGTGGAGCCCAG 8091494 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || |||||||| ||||| ||||| || ||||| || || Sbjct 8091495 TGACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCAGACCA 8091554 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||| ||||| || || |||||||||||| | | | | |||| || || || Sbjct 8091555 GCAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 8091614 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || |||||||| || || ||| ||||| |||| Sbjct 8091615 CATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCG 8091650 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || ||||| || || || || || || || || || Sbjct 8088809 ACAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTGGAGCCC 8088868 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||| ||||| ||||| || ||||| || Sbjct 8088869 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGAC 8088928 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || || |||||||||||| | | | | |||| || || Sbjct 8088929 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTAC 8088988 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| || || ||||| || || ||| ||||| |||| Sbjct 8088989 AACATCCAGAAAGAATCAACTCTGCACCTGGTGCTGCG 8089026 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 8089039 GATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTCGAGGTGGAGCCCAG 8089098 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 8089099 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 8089158 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | | | | || || || || Sbjct 8089159 GCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAA 8089218 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| || || || ||| ||||| |||| Sbjct 8089219 CATCCAGAAGGAGTCAACTCTGCACCTGGTGCTGCG 8089254 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || || ||||| || ||| Sbjct 8089267 GATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTTGAGCCCAG 8089326 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || ||||| || || Sbjct 8089327 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCA 8089386 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||| || || || || |||||||||||| | | | | |||| || || || Sbjct 8089387 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 8089446 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| || || || ||| ||||| |||| Sbjct 8089447 CATCCAGAAGGAGTCAACTCTGCACCTGGTGCTGCG 8089482 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || ||||| || ||| Sbjct 8091663 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAG 8091722 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 8091723 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 8091782 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||| || || || || |||||||| ||| | | | | |||| || || || Sbjct 8091783 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 8091842 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| || || || ||| ||||| |||| Sbjct 8091843 CATCCAGAAGGAGTCAACTCTGCACCTGGTGCTGCG 8091878 >seq1205 Length=14428146 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1810795 GATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 1810854 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || |||| || | ||| ||||||||||| ||||| || ||||| || | Sbjct 1810855 TGACACCATTGAGAACGTGAAGGCCAAA-ATCCAAGACAAGGAAGGCATCCCTCCTGACC 1810913 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || | |||| ||||| || || |||||||| ||| | | | | | || || || | Sbjct 1810914 AGCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTCTCTGACTACA 1810973 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| || |||||||| || || ||| | || |||| |||| || || Sbjct 1810974 ACATCCAGAAGGAATCTACTCTGCACCTTGTCCTGCGCCTGCGGGGTGG 1811022 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1810567 GATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 1810626 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| |||||||| ||||| ||||| || ||||| || || Sbjct 1810627 TGACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCA 1810686 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||| ||||| || || |||||||| || | | | |||| || || || Sbjct 1810687 GCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCTGACTACAA 1810746 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || |||||||| || || || | ||| |||| Sbjct 1810747 CATCCAGAAGGAATCTACTCTGCATCTCGTGCTGCG 1810782 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1810340 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1810399 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || ||||| || || Sbjct 1810400 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 1810459 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| ||||| || || |||||||| ||| | | | | | || || || ||| Sbjct 1810460 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTCTCCGACTACAAC 1810519 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || ||| | || |||| |||| || || Sbjct 1810520 ATCCAGAAGGAATCTACTCTGCACCTTGTCCTGCGCCTGCGGGGTGG 1810566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449688982482880