Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq965 96.9 4e-15 >seq965 Length=20806668 Score = 96.9 bits (106), Expect = 4e-15 Identities = 245/367 (67%), Gaps = 7/367 (2%) Strand=Plus/Plus Query 162629 CCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGAT 162688 ||| |||| || || ||||| |||||||| | ||| ||||||||||||||| | Sbjct 5050538 CCTGCAGCACTCGGACTATCTCGGCGTTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGT 5050597 Query 162689 TAATAACATATTTCCACTTAACGCTGAGTCCGTAC-AGATCCTGTAGACAGTTCAGATCG 162747 | || | || ||| ||| | || | | || ||||| | ||||| || ||| Sbjct 5050598 TGATCAGGTAGCGCCATGGCACGGGGC-TCTGCAGGAGGTCCTGCATGCAGTTGAGGTCG 5050656 Query 162748 GCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACA 162807 ||||| | || ||| | || || || ||||| |||| | |||| || ||||| Sbjct 5050657 GCCTGCAGCCGGGACCAGGCGGCATAGACCACGCTTTCCAGGCGGCTGGCCACGAAGACG 5050716 Query 162808 TTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCC 162865 ||| ||| || | | | || || ||||||| ||| | | || | ||| | Sbjct 5050717 TTGGGGAAGCAGGCAGCAATGGCCCGCACGGCCTTCTGGAAGGCGGCCGGG--GATTTGC 5050774 Query 162866 TATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGA 162925 | ||||| || || ||||| | ||||| ||||||||||||| | ||| | | ||| | Sbjct 5050775 TGTCTACATGGACACAGTAAACGTTCTGGGGGGCGTAGATGGATCGCAGGAGCCGCTC-A 5050833 Query 162926 ACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGC 162985 |||| || || || ||||| | | || || || || ||||||||||| ||||||| Sbjct 5050834 ACATGTCGATTTTGTGGTGAATGATCATGGAGTAGGCGATGGGGAACTCCTCCTCCTCCT 5050893 Query 162986 GACTGAG 162992 | ||||| Sbjct 5050894 GGCTGAG 5050900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578163781081600