Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1324 109 4e-19 seq1205 98.7 7e-16 >seq1324 Length=11587733 Score = 109 bits (120), Expect = 4e-19 Identities = 167/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| || | ||||| || || ||| |||||| || |||||||| |||||| Sbjct 8091434 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 8091375 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| ||| | || Sbjct 8091374 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 8091315 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| || || |||| ||| ||| |||||| || | ||||| Sbjct 8091314 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CATTTTCAATGGTGTCACTGGGCTCCAC 8091256 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG-CATAGTTG 33754 |||| ||||| || || || || | || || ||||||||||| ||| |||| Sbjct 8091255 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCCATTGTTG 8091202 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| || | ||||| || ||||| ||||| || |||||||| || || Sbjct 8089038 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAC 8088979 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| || | || Sbjct 8088978 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 8088919 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | ||| ||| |||||| || | ||||| Sbjct 8088918 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CATTCTCAATGGTGTCACTGGGCTCCAC 8088860 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 |||| ||||| || || || || | || || |||||||||||||| |||| Sbjct 8088859 CTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTGTTG 8088807 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || | ||||| || ||||| ||| || || |||||||| |||||| Sbjct 8089266 CCACCCCTGAGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAG 8089207 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| ||| | || Sbjct 8089206 AGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 8089147 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | ||| || | |||||| || | ||||| Sbjct 8089146 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 8089088 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 8089087 CTCGAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8089040 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || | ||||| || || ||| || || || |||||||| || || Sbjct 8091662 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 8091603 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || |||||||||| | |||||| ||| | || Sbjct 8091602 AGGGTGCGCCCATCCTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGAGGG 8091543 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || || |||| ||| || | |||||| || | ||||| Sbjct 8091542 ATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTTTCGATGGTGTCACTGGGCTCCAC 8091484 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| || ||||||||||| Sbjct 8091483 CTCGAGAGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 8091436 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || | ||||| || ||||| ||| || || |||||||| ||||| Sbjct 8091890 CCACCCCTGAGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAC 8091831 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || || ||||||| | |||||| ||| | || Sbjct 8091830 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGA 8091771 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| || | |||||| || | || || Sbjct 8091770 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTCTCGATGGTGTCACTGGGCTCAAC 8091712 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 8091711 TTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8091664 >seq1205 Length=14428146 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | ||| | ||| ||||| || || || |||||||| || || Sbjct 1810794 CCACCTCTGAGGCGCAGCACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAC 1810735 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || || |||||||||| | |||||| || | || Sbjct 1810734 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1810675 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || ||||| | | ||| |||||| || | || || Sbjct 1810674 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCA-CGTTCTCAATGGTGTCACTGGGCTCAAC 1810616 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || ||||| | || || |||||||||||||| Sbjct 1810615 CTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1810568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328555390456320