Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq870 120 4e-22 >seq870 Length=27993427 Score = 120 bits (132), Expect = 4e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 213995 CAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTT 214054 ||||| || || || ||| | ||||| || || || ||| | | | | ||| | Sbjct 2056128 CAGATGATCGATGGAGAAATGTACCCGCCGACGGTGCGGGACACGCAGGCAGAGATGCTG 2056187 Query 214055 TACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 ||| |||| ||| ||||| | | || ||| | |||| | ||| |||| || || Sbjct 2056188 TACCCACCCCACGTGCCCGAGCACCTGCGCTTCTCCGTGGGGCAGGAGGTGTTCGGGCTG 2056247 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 ||||| || | ||| ||||||||| ||||||||| | ||||||||| | || |||||| Sbjct 2056248 GTGCCAGGGCTGATGATGTACGCCACGATCTGGCTGCGTGAGCACAACCGCGTCTGCGAC 2056307 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 ||||| || || ||||||| || ||| ||||||| ||||| ||||||| Sbjct 2056308 GTGCTCAAGCACCAGCACCCCGAGTGGGACGACGAGCAGCTCTTCCAGA 2056356 Score = 116 bits (128), Expect = 5e-21 Identities = 199/289 (69%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 || ||||| || | |||||||||| | ||||| || ||||| ||| | || || ||| Sbjct 2058009 AAAGAGATGGCAGCGGAGCTGGAGGAGCTGTACGGGGACATCGATGCCATGGAGCTGTAC 2058068 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724 | | | || | || || || | |||| |||||| | || || | | | ||| Sbjct 2058069 CCCGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTTGGCGAGACCATGGTGGAG 2058128 Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784 |||||| ||||||||||||| ||| || || |||| |||||||||||| | ||| Sbjct 2058129 ATGGGGGCACCGTTCTCCCTGAAGGGGCTGATGGGCAACGCCATCTGCTCCCCTGAGTAC 2058188 Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844 ||||| | || ||| |||| || | | | ||| ||||||| | | || | || Sbjct 2058189 TGGAAGCCCAGCACCTTCGGGGGCAAGGTGGGCTTCGACATCGTCAACACGGCCTCTCTG 2058248 Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893 ||| |||||||| | |||||| ||||| ||||| || |||| |||| Sbjct 2058249 CAGAAGCTCATCTGCAACAACGTGAAGGGCTGTCCCTTCACCGCCTTCC 2058297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723005386871040