Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq242 138 2e-27 seq458 125 1e-23 >seq242 Length=156412533 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || | |||||||||||| || | ||| | Sbjct 135808585 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATTAGGCCCCTCTTCT 135808644 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 135808645 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 135808704 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 135808705 CAACCACTCTCTCACC 135808720 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||||||| | ||||| || ||||||||||| ||||||||||||||||| ||||||||| Sbjct 135810741 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTAACACAAGGCATTGTTTCAATAGCATTA 135810800 Query 39854 AA 39855 || Sbjct 135810801 AA 135810802 >seq458 Length=112617285 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | ||| |||||||| |||||||||||||||| || | || | Sbjct 99186508 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 99186449 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| |||||||||||||| ||||| || |||||||| | Sbjct 99186448 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 99186389 Query 39759 CAAC 39762 | || Sbjct 99186388 CTAC 99186385 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| |||||||| | || |||||||| || || ||||| || || || || |||||| Sbjct 99187747 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTGCCT 99187688 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||| || || ||||||||||| ||||| ||||| Sbjct 99187687 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 99187653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686590280389440