Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq242 416 7e-112 seq458 331 2e-86 seq818 131 4e-26 seq24970 107 5e-19 >seq242 Length=156412533 Score = 416 bits (460), Expect = 7e-112 Identities = 328/389 (84%), Gaps = 3/389 (1%) Strand=Plus/Minus Query 24762 GGTGCGCATATTTTCGTCGCGATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGT 24821 ||| |||||| | || ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 113594108 GGTACGCATACTATCATCGCGATAGATGATCGGGGATTCAGTAACATGCACGCCGGAAGT 113594049 Query 24822 GAATTCAAACAGGGTTCTGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGC 24881 |||||| ||||||||| || |||||||| ||||||| ||| ||| |||| | |||||| Sbjct 113594048 GAATTCTAACAGGGTTAAGGAGTCGTTCTAGTACTGTATTCTGCAGCCCAGTGGCTTAGC 113593989 Query 24882 ATTAACTTCCGGAGCCACACCGGTGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACAT 24941 || | ||||||| |||||||| || ||| ||||| |||||||||||||||||||||| Sbjct 113593988 GTT-AGATCCGGAGTCACACCGGCGCTAACGTCAGCAAGCAGGGTGTGGAAGTAGGACA- 113593931 Query 24942 TTTCATGTCAGGCCACTTCTTTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGA 25001 ||||||||||| ||| |||||||| ||||||||| || |||||||||||||| ||||| Sbjct 113593930 TTTCATGTCAGTCCAGTTCTTTCCGGAGCGGGGCGTTCATATCACGTTGTGAATCTCTGA 113593871 Query 25002 AGCGGTGATGAC-GCCGAGCCGTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTC 25060 |||| |||| || ||||||||||||| ||||| |||||||||| ||||||||||||| Sbjct 113593870 AGCGTTGATCACATACGAGCCGTAATTTATGCCACGCATCATCCCGCTGTTCGACAGCTG 113593811 Query 25061 TCACGTCGATCCCGGTACGCTGCAGGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTC 25120 |||| ||||||| ||||| ||| ||| ||||| || |||||| |||||| |||||| Sbjct 113593810 TCACATCGATCCTCGTACGTAGCATGATCATGTCTGGAGTCATGATGCCACGATCTGCTA 113593751 Query 25121 AGTGGCTTTCTGTTTCAGGAATCCAAGAG 25149 || | || ||||||||||||||||||| Sbjct 113593750 TATGCCGTTTTGTTTCAGGAATCCAAGAG 113593722 >seq458 Length=112617285 Score = 331 bits (366), Expect = 2e-86 Identities = 340/424 (80%), Gaps = 18/424 (4%) Strand=Plus/Minus Query 30602 ACAACGCATAACCCTGAAAGATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGA 30661 |||||||| |||||||| || |||||| || |||||| ||| | | | ||| |||| | Sbjct 44870341 ACAACGCAATACCCTGAA-GAAAATGCAAGGCTCTTTGGTCAATCTAGG-CAGTTAAACA 44870284 Query 30662 TCTCGGCGTATATCAAAGCGCGATCAACAAGGCCATTCATGCAGGCCGAAAGAttttttt 30721 ||||| |||||| ||||||||| |||| ||||||||||||||||| |||| |||| Sbjct 44870283 -CTCGGGCAATATCACAGCGCGATCTTAAAGGTCATTCATGCAGGCCGAATGATTGTTTT 44870225 Query 30722 AACTATAAACGCTGATGGAAGCGTTTATGCGGAAGAGGTAAAGCCCTTCCCGAGTAACaa 30781 |||||| |||||||| | ||| ||||||||| || |||||| | ||||||| || | Sbjct 44870224 -ACTATAGGCGCTGATGCAGGCGGTTATGCGGAGGACGTAAAGTCATTCCCGACTA--CA 44870168 Query 30782 aaaaaCAACAGCATAAATAACCCCGCTCTTACACATTCCAGCCCTGAAAAAGGGCATCAA 30841 | |||| ||||||| |||||||||||||||| |||||||| ||| || |||||||||| Sbjct 44870167 ACAAACTACAGCAT-AATAACCCCGCTCTTA-ACATTCCACCCCAGATAAAGGGCATC-T 44870111 Query 30842 ATTAAACCACACCTATGGTGTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAA 30901 |||| || ||||||| || | ||||||||||||||||| |||| ||| | || |||| || Sbjct 44870110 ATTATACTACACCTA-GGGGCATGCATTTATTTGCATATATTC-ATCGAGTGCTATCGAA 44870053 Query 30902 GGAAATACTTACATATGGTTCGTGCAAACAAACGCAACGAGGCTCTACGAATCGAGAGTG 30961 ||||||||||||| ||| |||| |||| |||||||||| ||||| | |||||| | || Sbjct 44870052 TGAAATACTTACATTAGGTGCGTGTAAAC-AACGCAACGATGCTCT-CAAATCGACA-TG 44869996 Query 30962 CGTTGCTTAACAAAATCGCAATGCTTGGAACTGAGAAGACAGCGGAAGCTGTGGGCGTTG 31021 ||| ||| || | ||| || ||||||||||||| ||||||||| || ||| ||| || Sbjct 44869995 CGTAGCTATAC-AGATC-CACTGCTTGGAACTGATAAGACAGCG--AGTCGTGTGCGATG 44869940 Query 31022 ATAA 31025 |||| Sbjct 44869939 ATAA 44869936 Score = 105 bits (116), Expect = 2e-18 Identities = 187/266 (70%), Gaps = 5/266 (2%) Strand=Plus/Minus Query 28962 CTTTTTCTGATAGATAATGTTCTGTTAAAATATCTCCGGCCTCATCTTTTGCCCGCAGGC 29021 || ||||| | ||| | ||||||||| | ||||||| || | ||||||||| | | Sbjct 53613367 CTGTTTCTCACTGATTAGGTTCTGTTACA-TATCTCCAGCTGCCTCTTTTGCCGGAGCGT 53613309 Query 29022 TAATGTCTGAAAATTGAGGTGACGGGTTAAAAATAATATCCTTGGCAACCTTT-TTTATA 29080 | |||| ||||| || ||| | | |||| ||||| |||||||| ||| | Sbjct 53613308 TCATGTACGAAAAACGACTTGATCGCCGCCTAGGAATACCCTTGCCAACCTTTATTTCTG 53613249 Query 29081 TCCCTTTTAAATTTTGGCTTAATGACTATATCCAATGAGTCAAAAAGCTCCCCTTCAATA 29140 ||||| | | |||||| | | ||| || ||||||| | |||||| |||||| Sbjct 53613248 TCCCTCTCATGCCTTGGCTGAGAGGCTACTCCCTGTGAGTCATAT-GCTCCCATTCAATG 53613190 Query 29141 TCTGTTGCCCCTAAGACCTTTAATATATCGCCAAATACAGGTAGCTTGGC-TTCTACCTT 29199 ||| | ||| || | || ||| |||||||||||| ||| || ||||| |||||| | Sbjct 53613189 GTTGTAGGCCCAAATATCTCTAAAATATCGCCAAATGGAGG-AGATTGGCCTTCTACATA 53613131 Query 29200 CACCGTTGTTCGGCCGATGAAATGCA 29225 | ||||||||| |||||||||||| Sbjct 53613130 CTACGTTGTTCGATCGATGAAATGCA 53613105 >seq818 Length=39844632 Score = 131 bits (144), Expect = 4e-26 Identities = 161/207 (78%), Gaps = 10/207 (5%) Strand=Plus/Plus Query 33143 GCTAATAA-CAGGCCTGCTGGTAATCGCAGGCCTTT-TTATTTGGGGGAGAGGGAAGTCA 33200 || ||||| |||| |||||| ||||| || |||||| ||| ||||||||||||||| ||| Sbjct 1526871 GCCAATAAGCAGGGCTGCTGATAATCCCATGCCTTTATTAATTGGGGGAGAGGGAAATCA 1526930 Query 33201 TGAAAAAACTAACCTTTGA-AATTCGATCTCCAGCACATCAGCAAAACGCT-ATTCACGC 33258 ||| |||||||| | || | ||||||||||| |||||| | | ||||| | |||||| Sbjct 1526931 TGATCCAACTAACCGTAGAGATTTCGATCTCCACAACATCAACGACACGCTAAATCACGC 1526990 Query 33259 AGTACAGC-AAATTCTTCCAGACCCAACCAA-ACCAATCGTAGTAACCA-TTCAGGAACG 33315 |||||||| | || ||| | || | || ||| || |||||| ||| || |||| ||| | Sbjct 1526991 AGTACAGCTAGATCCTTACTGATCTAATCAACACAGATCGTA-TAAGCATTTCATGAA-G 1527048 Query 33316 CAACCGCAGCTTAGACCAAAAC-CGAA 33341 || |||||||| | ||| || |||| Sbjct 1527049 GTACTGCAGCTTAAATCAATACACGAA 1527075 >seq24970 Length=6292 Score = 107 bits (118), Expect = 5e-19 Identities = 99/120 (83%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 27708 GGCTTGCTGTACCATGTGCGCTGATTC-TTGCGCTCAATACGTTGCAGGTTGCTTTCAAT 27766 ||||||| ||||||||||||||||||| ||||||| |||| |||| |||| |||| || Sbjct 4769 GGCTTGCAGTACCATGTGCGCTGATTCTTTGCGCTATATACACTGCAAGTTGTTTTC-AT 4711 Query 27767 CTGTTCGTGGTATTCAGCCAGCACCGTAAGGTCTATCGGATTCAGTGCGCTTTCTACTCG 27826 ||||| || | |||| |||||| | |||| |||||| |||| ||||||| ||| ||||| Sbjct 4710 CTGTTTGTTGGATTCTGCCAGCCCTGTAA-GTCTATTCGATTTAGTGCGC-TTCCACTCG 4653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122669138589552