Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq242 122 7e-23 seq30835 116 3e-21 seq458 109 4e-19 >seq242 Length=156412533 Score = 122 bits (134), Expect = 7e-23 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| |||||| ||||||||| ||| Sbjct 107531566 TGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTACGTTCTAAATGGTGAATTGT 107531507 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || |||||||||||||| || || ||||| || || | Sbjct 107531506 CTTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCA 107531447 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | ||||||||||| |||||||| || || || Sbjct 107531446 GCTATTCACTGCTCACGTACATGATTGCCCATGTCAC 107531410 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||||||||||| |||||||| || || ||||| || ||||||||| Sbjct 135808708 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 135808649 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| | || | |||||||| ||||| || || ||||| | || || | ||| Sbjct 135808648 CTGAAGAAGAGGGGCCTAATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 135808589 Query 44255 GA 44256 || Sbjct 135808588 GA 135808587 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| ||||| ||| ||| || ||| |||| || || ||| Sbjct 135812503 CCAGAAGCTCGCTGTTTCTATGGCTTTCAGATTCTCATTGAGAATGTTCACTCAGAGATG 135812444 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| | || ||||| || |||||||||||| Sbjct 135812443 TACAGCTTGCTCATAGACACCTACATCAAAGAT 135812411 >seq30835 Length=9899 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| |||||| ||||||||| ||| Sbjct 3275 TGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTACGTTCTAAATGGTGAATTGT 3334 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| | || || |||||||||||||| || || ||||| || || | Sbjct 3335 CTTGCCAACTCTATCAGCGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCA 3394 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | ||||||||||| |||||||| || || || Sbjct 3395 GCTATTCACTGCTCACGTACATGATTGCCCATGTCAC 3431 >seq458 Length=112617285 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| |||||| Sbjct 99184728 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 99184787 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| || ||| Sbjct 99184788 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAGGAT 99184835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397276307161480