Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1205 100 2e-16 seq1324 87.8 2e-12 >seq1205 Length=14428146 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || | ||| | ||||| || || || || |||||||| || | |||| || Sbjct 1810782 CGCAGCACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCG 1810723 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || |||| || | ||| || || || || | || || || Sbjct 1810722 TCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1810663 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| ||||| | | || | ||||| ||| ||||| || || || || Sbjct 1810662 TCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1810603 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 1810602 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1810568 >seq1324 Length=11587733 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || ||||| || || ||||||||| | | ||||| | Sbjct 8091422 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCA 8091363 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | || || | ||| || || || || | ||||| || Sbjct 8091362 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTG 8091303 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| |||| | ||||| ||| || || || || || || Sbjct 8091302 TCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 8091243 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGC 27245 | ||||| ||||| || ||||||||||| ||| Sbjct 8091242 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGC 8091210 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || || || || || ||||||||| | | ||||| | Sbjct 8089254 CGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCA 8089195 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| ||||| || | || || | ||| || || || || | || || || Sbjct 8089194 TCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTG 8089135 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | || | ||||| ||| || || || ||||| || Sbjct 8089134 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATG 8089075 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 8089074 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8089040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424742283970752