Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq676 206 8e-48 seq1205 145 2e-29 seq1324 141 3e-28 seq458 93.3 1e-13 seq1505 89.7 2e-12 seq1473 89.7 2e-12 seq242 84.2 7e-11 >seq676 Length=62374962 Score = 206 bits (228), Expect = 8e-48 Identities = 909/1422 (64%), Gaps = 29/1422 (2%) Strand=Plus/Minus Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || || || || ||||| |||||| | || || || || || || || ||| Sbjct 54761454 GTGGAGATCATCGCCAACGATCAGGGTAACCGCACCACACCCAGCTATGTGGCGTTCACC 54761395 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||||| | || || ||| |||| || || || | || || || | ||| Sbjct 54761394 GATACGGAGCGGCTCATCGGGGATGCTGCCAAGAACCAGGTAGCAATGAACCCCACCAAT 54761335 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || | |||||||| ||||| || || || | | | | |||| | || || Sbjct 54761334 ACCATCTTTGATGCCAAGCGCCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCG 54761275 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | || |||| ||||| ||| || || || || | || || | | || Sbjct 54761274 GACATGAAGCATTGGCCTTTCCGTGTGGTG---AATGAGGGAGGCAAGCCCAAGGTGCAG 54761218 Query 349499 GTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 || || || || || || | || || || || || || || || || ||||| | Sbjct 54761217 GTGGAGTACAAGGGGGAGATGAAGACC-TTCTTCCCAGAGGAGATCAGCTCCATGGTGCT 54761159 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGG-TGAAACAGTAACTGATGCTGTTA 349616 || |||||||| |||||||| || ||| | || || || || ||||||| | Sbjct 54761158 CACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGTGCAAG-GTGCAGAATGCTGTCA 54761100 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 | || || || || || || ||||| ||||||| || || || || || |||| || Sbjct 54761099 TCACAGTGCCGGCATACTTCAATGACTCCCAGCGCCAGGCCACCAAGGACGCCGGCACCA 54761040 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 | | || | ||||| | | || || ||||| |||||||| || || || || |||| Sbjct 54761039 TCACAGGCCTCAATGTGATGCGTATCATCAATGAGCCCACTGCAGCTGCTATCGCTTATG 54760980 Query 349737 GGCTTGATAAAATGAGTGACCA------AGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790 | || || || | | | || ||| || || | ||||| ||||| | || | Sbjct 54760979 GCCTGGACAAGAAGGGAACCCGGGCTGGAGAGAAGAACGTGCTTATCTTTGACCTGGGAG 54760920 Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850 | || ||||||||||| || | || || | || || || |||||||| || || | | Sbjct 54760919 GGGGCACTTTTGATGTCTCCATCCTTACCATCGAGGATGGGATTTTTGAGGTAAAGTCCA 54760860 Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG 349910 ||||||| ||||| ||| | ||||| || || ||||| || || | || || |||| Sbjct 54760859 CTGCTGGCGATACCCATTTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCACTTTG 54760800 Query 349911 TTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGT 349969 | ||||||| ||||| ||||| || ||| |||| | ||| ||||| || | Sbjct 54760799 TGGAAGAATTCAAGCG-CAAGCACAAGCGTGACATTGCTGGTAACAAGCGAGCAGTGAGG 54760741 Query 349970 CGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACT--ACCCAAACCT 350027 ||||| | || || ||||| | || ||||| || ||| || || || || || Sbjct 54760740 CGCCTGCGCACGGCTTGTGAGAGGGCAAAGCGCACC--CTCAGCTCCTCCACACAGGCCA 54760683 Query 350028 CTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTC 350087 ||||| ||||| ||||| ||| |||| || |||| | || ||||| ||||| | Sbjct 54760682 GCATTGAGATTGACTCTCTGTTTGAGGGCATTGACTTCTACACCTCCATTACTCGTGCCC 54760623 Query 350088 GGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147 | ||||| || | | || ||||| | | || |||| || ||||| || | Sbjct 54760622 GTTTTGAGGAGCTCAATGCTGACCTTTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGCTC 54760563 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 | ||||| || | ||| |||||| | || | || | || ||||| |||| Sbjct 54760562 TGCGTGATGCCAAGCTTGACAAGGGCCAGATTCAGGAGATCGTGCTGGTGGGTGGCTCTA 54760503 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCT 350266 | || || || || | || || | || || || || ||||||||||| | | | Sbjct 54760502 CCCGGATCCCCAAGATCCAGAAGCTGCTGCAGGATTTCTTCAATGGCAAAGAGCTCAACA 54760443 Query 350267 AGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTA 350326 ||| | || || || ||||| ||||| || || ||||||||||| || ||| |||| | Sbjct 54760442 AGAGC-ATCAACCCCGATGAGGCTGTGGCTTACGGTGCTGCTGTACAAGCAGCTATCCTC 54760384 Query 350327 TCTGGAAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCACTT 350383 ||| | ||| ||| | | || | ||||| | || | ||||| || || || Sbjct 54760383 ATGGGAGACAAG---TCTGAGAATGTGCAGGATCTCCTGCTGTTGGATGTCACCCCTCTG 54760327 Query 350384 TCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACT 350443 || || || | || || |||| | ||| ||||||| ||| || | || | || Sbjct 54760326 TCCCTGGGCATCGAGACAGCTGGAGGAGTGATGACTGCTCTCATCAAGCGTAACACCACC 54760267 Query 350444 GTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAG-CCAGCGGTAAC 350502 | || || ||| | | || || || | || | |||| || ||| ||| || Sbjct 54760266 ATCCCCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAACAG-TGTCCT 54760208 Query 350503 AATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATT 350562 | || || | |||||||| | ||| || | ||||| || || || | || Sbjct 54760207 GGTCCAGGTGTACGAAGGTGAGAGGGCTATGACAAGGGATAACAACTTGCTGGGCAAGTT 54760148 Query 350563 TACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGA 350622 | ||||| | || || ||| || || ||||| || ||||| || ||| |||| || Sbjct 54760147 TGACCTAACAGGCATCCCCCCAGCACCCAGGGGAGTCCCCCAGATCGAGGTCACTTTTGA 54760088 Query 350623 TATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 || ||| | |||||||| | || || | ||| || || || Sbjct 54760087 CATCGATGCCAATGGTATCCTGAACGTCAGCGCCGTGGACAA 54760046 >seq1205 Length=14428146 Score = 145 bits (160), Expect = 2e-29 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 |||| ||||||| || | | || ||||| || |||||||| || || || || || | Sbjct 1811030 TTTAGTTACCACCCCGCAGGCGCAGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGT 1810971 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || ||||||||||| || || || |||||||| || || | ||||| | Sbjct 1810970 AGTCAGAGAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGT 1810911 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || ||||| || || || ||||| || || || || ||||| | ||| | Sbjct 1810910 CAGGAGGGATGCCTTCCTTGTCTTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGG 1810851 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| ||||| || | ||||| || || || || || ||||| |||||||| Sbjct 1810850 GCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1810796 Score = 134 bits (148), Expect = 4e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | || ||||| || |||||||| || || || || || || || Sbjct 1810570 CATCCCACCCCGCAGGCGCAGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTC 1810511 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || ||||||||||| || || || |||||||| || || | ||||| ||||| Sbjct 1810510 GGAGAGGGTACGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGG 1810451 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || ||||| || ||||| || || || || ||||| || || | ||| || || Sbjct 1810450 AGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 1810391 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||| ||||| || | ||||| || || || || || || || ||||||||| Sbjct 1810390 AACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATT 1810339 >seq1324 Length=11587733 Score = 141 bits (156), Expect = 3e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| || ||||| || || || || ||||| | || |||||||| Sbjct 8089023 AGCACCAGGTGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 8088964 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| |||||||| || ||||| || ||| Sbjct 8088963 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 8088904 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || || ||||| || | ||| Sbjct 8088903 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTC 8088844 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| || || || ||||| ||||||||| Sbjct 8088843 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATT 8088811 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| ||||| || || || || || || || | || ||||||||| Sbjct 8089251 AGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCT 8089192 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| || || ||||| ||||| || ||| Sbjct 8089191 TCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 8089132 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | ||| || || || || || || | ||| Sbjct 8089131 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTC 8089072 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || ||||| |||||||| Sbjct 8089071 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8089040 Score = 122 bits (134), Expect = 3e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || |||||||| || || || || || || | || ||||||||| Sbjct 8091419 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCT 8091360 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| || || ||||| || || || ||| Sbjct 8091359 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 8091300 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || || ||||| || | ||| Sbjct 8091299 TGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 8091240 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 || || || || || || ||||| |||||| Sbjct 8091239 TTGCCAGTCAGGGTCTTCACAAAGATCTGC 8091210 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| ||||| || || || || || || || | || ||||||||| Sbjct 8091875 AGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 8091816 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| || || || | ||||| || || ||||| ||||| || ||| Sbjct 8091815 TCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 8091756 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | ||| || |||||||| || || | ||| Sbjct 8091755 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTC 8091696 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 8091695 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8091664 >seq458 Length=112617285 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | |||||| ||||| || | |||||||||||| ||||| | Sbjct 99186511 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 99186452 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| || ||||| || || ||||| ||| |||| Sbjct 99186451 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAA 99186392 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 99186391 AGGCTACTA 99186383 >seq1505 Length=8021379 Score = 89.7 bits (98), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| || | ||||| ||||||||||| || || ||||||| || || ||||||| Sbjct 3518937 ATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCCACGAAAGATG 3518878 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 | || | ||||| ||| | ||||| || |||| || || || ||||| || || || | Sbjct 3518877 CCGGAACAATTGCAGGGCTGAATGTCCTGCGAATCATCAACGAGCCCACAGCAGCTGCCA 3518818 Query 349728 TTGCATATGGGCTTGATAA 349746 |||| |||||||| || || Sbjct 3518817 TTGCCTATGGGCTGGACAA 3518799 >seq1473 Length=6196912 Score = 89.7 bits (98), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | ||| || | || ||||| || || |||| || ||| || || | || Sbjct 1688117 ACCACCACGAAGTCTCAGCCCCAGGTGAAGGGTGGATTCTTGTTTAATGTTGTAGTTGGA 1688058 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 ||||| | ||||| || || || || ||||||||||| || | ||||||| |||| Sbjct 1688057 CAATGTGCATCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCCACTGCTGATTCTGAGG 1687998 Query 140630 AAT-TCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 || |||||| | |||||| | | |||||| || | | |||||| |||||| Sbjct 1687997 GATGTCCTTC-TCATCCTGGA--------TCTACATTTTCTGTAGTATCAGAAGGTTCAG 1687947 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || | || || || | || || || | || |||||||| Sbjct 1687946 CCTCGAGGGTGATGGTTTTCCCCATGAGGGTGTTCATGAAGATCTGCAT 1687898 >seq242 Length=156412533 Score = 84.2 bits (92), Expect = 7e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 223722 CCTCATCTCTTGATATTAA-TTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCTTT 223780 |||||||||| | || ||| |||||| || || || ||||||||||||| || ||||| Sbjct 135808585 CCTCATCTCT-GCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATTAGGCCCCTCTTC 135808643 Query 223781 TTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAAAC 223840 |||| ||||||||| || ||| | || ||||| || || ||||| || |||||| Sbjct 135808644 TTCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAG 135808703 Query 223841 GCTAC 223845 || || Sbjct 135808704 GCAAC 135808708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514534210948088