Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq242 93.3 3e-14 seq30835 89.7 4e-13 >seq242 Length=156412533 Score = 93.3 bits (102), Expect = 3e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||| || ||||||||||| ||||| || || || ||||| ||||| ||||| Sbjct 107531407 CCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACT 107531466 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 ||||| ||||| ||||| || || ||||| || || || || | || | | | || Sbjct 107531467 CCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACG 107531526 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || ||||| |||| || |||||||| |||||| Sbjct 107531527 TAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATC 107531565 >seq30835 Length=9899 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||| || ||||||||||| ||||| || || || ||||| ||||| ||||| Sbjct 3434 CCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACT 3375 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 ||||| ||||| ||||| || | ||||| || || || || | || | | | || Sbjct 3374 CCTAGTCCCATGTCTCCAGACCGCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACG 3315 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || ||||| |||| || |||||||| |||||| Sbjct 3314 TAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATC 3276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391768398454648