Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1205 197 2e-45 seq1324 188 8e-43 >seq1205 Length=14428146 Score = 197 bits (218), Expect = 2e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || |||||||||||| | || Sbjct 1810796 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1810855 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| ||||| || |||||||| || || ||||| |||||| Sbjct 1810856 GACACCATTGAGAACGTGAAGGCCAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 1810915 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||| ||||| || || |||| |||||||| | ||||| || Sbjct 1810916 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTCTCTGACTACAAC 1810975 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||| || || ||| |||| || || ||||| Sbjct 1810976 ATCCAGAAGGAATCTACTCTGCACCTTGTCCTGCGCCTGCGGGGTGG 1811022 Score = 190 bits (210), Expect = 2e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || |||||||| || || |||||||||||| | | Sbjct 1810339 AATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 1810398 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||||| || || ||||||||||| || || ||||| ||||| Sbjct 1810399 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCA 1810458 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || ||||||||||| ||||| || || |||| |||||||| | ||||| || Sbjct 1810459 GCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTCTCCGACTACAA 1810518 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||| || || ||| |||| || || ||||| Sbjct 1810519 CATCCAGAAGGAATCTACTCTGCACCTTGTCCTGCGCCTGCGGGGTGG 1810566 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 1810568 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1810627 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || |||| || || || ||||||||||| || || ||||| |||||| Sbjct 1810628 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 1810687 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||| ||||| || || || | || ||||| | ||||| || Sbjct 1810688 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCTGACTACAAC 1810747 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||| ||||| || |||| || | ||||| Sbjct 1810748 ATCCAGAAGGAATCTACTCTGCATCTCGTGCTGCGCCTCAGAGGTGG 1810794 >seq1324 Length=11587733 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || ||||||||||| || ||||| ||||| ||| | || Sbjct 8091436 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8091495 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| ||||||| || || ||||||||||| || || |||||||||||| Sbjct 8091496 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCAGACCAG 8091555 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||||||||| || ||||||| || ||||| | ||||| || Sbjct 8091556 CAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 8091615 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || || || |||| || | ||||| Sbjct 8091616 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 8091662 Score = 181 bits (200), Expect = 1e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || ||||||||||| || ||||||||||| ||| | | Sbjct 8088811 AATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTGGAGCCCAG 8088870 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || || ||||||||||| || || ||||| ||||| Sbjct 8088871 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCA 8088930 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 8088931 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 8088990 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| ||||| || || || |||| || | ||||| Sbjct 8088991 CATCCAGAAAGAATCAACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 8089038 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||||||||| || ||||| ||||| ||| | || Sbjct 8089040 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8089099 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||| || ||||| ||||||||| Sbjct 8089100 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 8089159 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||||||||| || || |||| || ||||| | ||||| || Sbjct 8089160 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAAC 8089219 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || || |||| || | ||||| Sbjct 8089220 ATCCAGAAGGAGTCAACTCTGCACCTGGTGCTGCGCCTCAGGGGTGG 8089266 Score = 176 bits (194), Expect = 5e-39 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 ||| |||||||| ||||| || || |||||||| || || |||||||| ||| | |||| Sbjct 8091210 GCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGA 8091269 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | ||||| |||| ||||||| || || |||||||||||||| ||||| ||||||||||| Sbjct 8091270 CACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCA 8091329 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 | | || || |||||||| ||||| || || |||| || ||||| | ||||| || | Sbjct 8091330 GAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAACAT 8091389 Query 27588 CCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || || ||||| || || || || |||| || | ||||| Sbjct 8091390 CCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 8091434 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || || |||||| | || Sbjct 8089268 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8089327 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||||||||| || || ||||| |||||| Sbjct 8089328 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAG 8089387 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||| ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 8089388 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 8089447 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || || |||| || | ||||| Sbjct 8089448 ATCCAGAAGGAGTCAACTCTGCACCTGGTGCTGCGCCTCAGGGGTGG 8089494 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || || |||||| | || Sbjct 8091664 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8091723 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || ||||||||||| || ||||| ||||||||| Sbjct 8091724 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 8091783 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||| ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 8091784 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 8091843 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || || |||| || | ||||| Sbjct 8091844 ATCCAGAAGGAGTCAACTCTGCACCTGGTGCTGCGCCTCAGGGGTGG 8091890 Score = 111 bits (122), Expect = 2e-19 Identities = 108/134 (81%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAGGTGATAGCATTGCAAATTTGAAGGC 27488 ||||||||||| || ||||| ||||| ||| ||| |||| | ||| | ||| | ||||| Sbjct 8089734 ACCGGCAAGACCATCACTCTCGAGGTGGAGCTCA-GTGACACCATCGAGAATGTCAAGGC 8089792 Query 27489 TAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAA 27548 || || ||||||||||| || ||||||||||| |||||| | || || ||||||||||| Sbjct 8089793 CAAGATCCAGGACAAGGAAGGCATTCCTCCAGA-CAGCAGAG-CTGATCTTTGCTGGTAA 8089850 Query 27549 GCAACTCGAGGATG 27562 ||| || || |||| Sbjct 8089851 GCAGCTGGAAGATG 8089864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570045947067520