Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq965 264 1e-65 >seq965 Length=20806668 Score = 264 bits (292), Expect = 1e-65 Identities = 625/931 (67%), Gaps = 21/931 (2%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || || |||| ||| |||| ||||| |||||||||||||| || | || |||||||| Sbjct 5050903 CCGCTCAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGATCATTCACCACAAA 5050844 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||| ||||| ||||| |||||| | ||||||||||||| |||||| | ||||| ||| Sbjct 5050843 ATCGACATGTT-GAGCGGCTCCTGCGATCCATCTACGCCCCCCAGAACGTTTACTGTGTC 5050785 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 || || ||| ||| ||| | || ||| || ||| |||||| || ||| Sbjct 5050784 CATGTAGACAGCAAATCCCCGGCCGCCTTCCAGAAGGCCGTGCGGGCCATTGCTGCCTGC 5050725 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 ||||| ||||| | ||||| ||| ||| | |||||| || | | ||||| || Sbjct 5050724 TTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTATGCCGCCTGGTCCCGG 5050665 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTAC 13970 ||||||||||||||| ||||||| |||||| |||||| ||| | ||| Sbjct 5050664 CTGCAGGCCGACCTCAACTGCATGCAGGACCTCCTGCAGAGCCCCGTGCCATGGCGCTAC 5050605 Query 13971 CTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCG 14030 ||| ||||| ||||| | |||||||| ||||||||||| ||||| || || | | Sbjct 5050604 CTGATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGATAGTCCGAGTG 5050545 Query 14031 CTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGCCCAACCACAAGC 14088 ||| ||| ||| ||| | ||| || ||||| | |||| | | | | ||||| Sbjct 5050544 CTGCAGGTGCTGCAGGGCCACAACACCGTGGAGTCGGAGAGGCCCT--CGGCCTCCAAGC 5050487 Query 14089 TGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGCA 14148 ||| ||| | | |||| ||||| ||| | | || ||| | | Sbjct 5050486 AGCAGCGCTGGGAGTACCACCACGAGGTGG---GCGAAACCAT--CTCTC-GCACTGCCC 5050433 Query 14149 GGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGG 14208 ||| || || || || | ||| |||||| || |||| | ||| ||| || | Sbjct 5050432 AGAAGAAACTGCCCCCACCCCACAGCTACCCCATGTTCACGGGCAGCGCGTACAACGCCG 5050373 Query 14209 TCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCC---TGCTCATGC 14265 |||| ||||| |||||| | | ||| || || || || || | | || | Sbjct 5050372 TCACACGGGACTTCGTGCAGTATGTCTTCGAGAAC---CCCACAGCACAAAAGTTCCTCG 5050316 Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325 | |||| | |||||| |||||||| |||||| || | ||||||||| || | | ||| Sbjct 5050315 AGTGGTCCAAGGACAGCTACAGCCCTGACGAGTACGTCTGGGCCACCCTGAACCGCATG- 5050257 Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTGGGCC 14384 |||| |||||||| | || ||| || ||||| | | |||||||||| ||| Sbjct 5050256 CCGGGCGTGCCGGGGGGCACTCCCCTCAGCGACAAGTTCCAGCTCTCGGACATGAACGCC 5050197 Query 14385 AAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTAC 14444 | | | ||||||||| | ||| ||||| || |||| || || || | ||| Sbjct 5050196 CTTCCCCGCCTGGTCAAGTGGGAGTACCTGGAGGGTGACATCAGCAAGGGCGCGCCCTAC 5050137 Query 14445 CCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAG 14504 ||||| ||| |||| |||| | | |||||||||||| |||| ||||||||| Sbjct 5050136 CCGCCCTGCACCGGCCGCCACCAGCGCTCCATCTGCATCTACGGGGTGGGCGACGTGCCC 5050077 Query 14505 TGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGAGTT 14563 ||| || | ||| | | || || || ||||||||||||||| |||| |||||| Sbjct 5050076 TGGATGCTGCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGACCCCGAGGTGGACGATGC 5050018 Query 14564 CGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 ||| | | |||||||| ||| || ||||| Sbjct 5050017 GGCCATCCAGTGTCTGGAGGAGTACCTGCGC 5049987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658433742632960