Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1324 109 5e-19 >seq1324 Length=11587733 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||||||| | || ||||| || ||||| || Sbjct 8089040 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8089099 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || ||||| |||||||| || || || || Sbjct 8089100 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 8089159 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || ||||||| | ||| | ||||| |||||| Sbjct 8089160 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAAC 8089219 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || |||| |||| | ||||||| || Sbjct 8089220 ATCCAGAAGGAGTCAACTCTGCACCTGGTGCTGCGCCTCAGGGGTGGGAT 8089269 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||||||| | || |||||||| ||||| || Sbjct 8088812 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 8088871 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || || || ||||| |||||||| || || || || Sbjct 8088872 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 8088931 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || |||| || | ||| | || || |||||| Sbjct 8088932 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 8088991 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | || |||| |||| || | ||||| || Sbjct 8088992 ATCCAGAAAGAATCAACTCTGCACCTGGTGCTGCGCCTGAGAGGTGGGAT 8089041 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || ||||| || || Sbjct 8089268 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8089327 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || ||||| ||||| || || || || || Sbjct 8089328 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAG 8089387 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| ||||| || |||| || | ||| | || || |||||| Sbjct 8089388 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 8089447 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| || | || |||| |||| | |||||||| Sbjct 8089448 ATCCAGAAGGAGTCAACTCTGCACCTGGTGCTGCGCCTCAGGGGTGGC 8089495 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||||||||||| | || ||||| || ||||| || Sbjct 8091436 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8091495 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| ||||| || || || || || Sbjct 8091496 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCAGACCAG 8091555 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || |||| || | ||| | || || |||||| Sbjct 8091556 CAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 8091615 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || |||| |||| | ||||||| || Sbjct 8091616 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGGGAT 8091665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434716728337920