Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq242 163 7e-36 >seq242 Length=156412533 Score = 163 bits (180), Expect = 7e-36 Identities = 273/388 (70%), Gaps = 5/388 (1%) Strand=Plus/Minus Query 26340 GGTACGCATGCCCTCGTCACGGAAAAGGATCGGCGACCCGGTGACCTTCACGTCAGTGGT 26399 ||||||||| | || || || | | |||||| || | || || | |||| | | || Sbjct 113594108 GGTACGCATACTATCATCGCGATAGATGATCGGGGATTCAGTAACATGCACGCCGGAAGT 113594049 Query 26400 GAACTCAAACAGGGTGCGAGCATCGTCCTCATACTGTTTCCCCCAGGCCAGCGCCTTGGC 26459 ||| || |||||||| | |||| || |||||| | | ||| |||| | ||| || Sbjct 113594048 GAATTCTAACAGGGTTAAGGAGTCGTTCTAGTACTGTATTCTGCAGCCCAGTGGCTTAGC 113593989 Query 26460 GTTAACTTCCGGTGCCACGCCGGTGCAAACTTCGGCAAGAAGGGTGAGAAAGTAGGACAT 26519 |||| | |||| | ||| |||| || ||| || ||||| |||||| | ||||||||||| Sbjct 113593988 GTTAGAT-CCGGAGTCACACCGGCGCTAACGTCAGCAAGCAGGGTGTGGAAGTAGGACAT 113593930 Query 26520 CTTCATATCAGTCCACTTCTTGCCCGACTTTGGCCTGGAAATGACGTTGTGAACTTCGGA 26579 ||||| |||||||| ||||| || || ||| | | || |||||||||| || || Sbjct 113593929 -TTCATGTCAGTCCAGTTCTTTCCGGAGCGGGGCGTTCATATCACGTTGTGAATCTCTGA 113593871 Query 26580 AGCAGTGATGACA-CCGAGGCGTAGACGGTGCCACGCGTCATCACCTTGCTCGA-TGTTG 26637 ||| |||| ||| |||| |||| |||||||| ||||| | || |||| | || Sbjct 113593870 AGCGTTGATCACATACGAGCCGTAATTTATGCCACGCATCATCCCGCTGTTCGACAGCTG 113593811 Query 26638 CTAACGTCAATACCTGTACGAGCCAGGATAATTTCTGGTGTCATGCTTCCACCTTCTGTT 26697 | || || || | ||||| || ||| || ||||| |||||| | |||| |||| | Sbjct 113593810 -TCACATCGATCCTCGTACGTAGCATGATCATGTCTGGAGTCATGATGCCACGATCTGCT 113593752 Query 26698 CTGCAGCTTTCTGTTTCAGGAATCCGAG 26725 | | || |||||||||||||| || Sbjct 113593751 ATATGCCGTTTTGTTTCAGGAATCCAAG 113593724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130189024507104