Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq30835 132 4e-26 seq242 129 5e-25 >seq30835 Length=9899 Score = 132 bits (146), Expect = 4e-26 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 |||||||| | || |||||||| |||| ||||| |||||||| ||||| || || Sbjct 3274 CTGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTACGTTCTAAATGGTGAATTG 3333 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || ||||| |||||||| || || ||||||||||| |||| ||||| || || ||||| Sbjct 3334 TCTTGCCAACTCTATCAGCGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCC 3393 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || || | ||||||||||||||||| || |||||| Sbjct 3394 AGCTATTCACTGCTCACGTACATGATTGCCCATGTC 3429 Score = 132 bits (146), Expect = 4e-26 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || ||||||||||||||||| | || || ||||| || || ||||| |||| Sbjct 3429 GACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACTCCTAG 3370 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || || |||||||| ||||| |||| || ||||| |||||||| Sbjct 3369 TCCCATGTCTCCAGACCGCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACGTAGAA 3310 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAG 6771 ||||| |||| |||||||| || | |||||||| Sbjct 3309 CTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAG 3274 >seq242 Length=156412533 Score = 129 bits (142), Expect = 5e-25 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || ||||||||||||||||| | || || ||||| || || ||||| |||| Sbjct 107531412 GACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACTCCTAG 107531471 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || | |||||||| ||||| |||| || ||||| |||||||| Sbjct 107531472 TCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACGTAGAA 107531531 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAG 6771 ||||| |||| |||||||| || | |||||||| Sbjct 107531532 CTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAG 107531567 Score = 129 bits (142), Expect = 5e-25 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 |||||||| | || |||||||| |||| ||||| |||||||| ||||| || || Sbjct 107531567 CTGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTACGTTCTAAATGGTGAATTG 107531508 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || ||||| |||||||| | || ||||||||||| |||| ||||| || || ||||| Sbjct 107531507 TCTTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCC 107531448 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || || | ||||||||||||||||| || |||||| Sbjct 107531447 AGCTATTCACTGCTCACGTACATGATTGCCCATGTC 107531412 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || || ||||| || |||||||| Sbjct 107535058 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 107535117 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| || |||| ||||| || || || ||||| | ||| ||||| |||||| Sbjct 107535118 CTGGTGCTGAAACCTTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAATCTTC 107535177 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || || | |||||||| |||| Sbjct 107535178 ACACCTTTTGCAGAGAGCTCTTTGG 107535202 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | || |||||||| ||||| ||| | ||||| || || || | Sbjct 107535202 CCAAAGAGCTCTCTGCAAAAGGTGTGAAGATTTGGGATGCTAATGGGTCGCGTGAGTTCC 107535143 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| || ||| | | |||||||| || ||||| || || || || |||| Sbjct 107535142 TGGATAAGCAAGGTTTCAGCACCAGAGAGGAGGGTGATTTGGGACCAGTGTATGGTTTCC 107535083 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| || ||||| || || || Sbjct 107535082 AGTGGAGGCATTTTGGAGCAGAATA 107535058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448054540725120