Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq242 136 3e-27 seq30835 87.8 1e-12 >seq242 Length=156412533 Score = 136 bits (150), Expect = 3e-27 Identities = 114/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || |||||||||||||||||||| |||||||| | ||||| || ||||| ||| Sbjct 41520163 GTGGTGGAGGAGCTCTTCCGAGATGGGGTTAACTGGGGCAGAATTGTGGCCTTCTTCGAG 41520104 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 ||||| ||||| ||||||||||| |||||||| || | || ||||||| |||||| Sbjct 41520103 TTTGGCGGTGTGATGTGTGTGGAGAGCGTCAACAGGGAGATGTTTCCCCTCGTGGACAAC 41520044 Query 3365 ATTGCCGCGTGGATGACAGA 3384 |||||| | |||||||| || Sbjct 41520043 ATTGCCACCTGGATGACTGA 41520024 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || ||||||||||| || | || |||||||| | ||||||||| Sbjct 107531404 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 107531463 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||||||| | || ||||| || | ||||||||| | || || ||| | Sbjct 107531464 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 107531523 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || || ||||| | | | || || ||||||| | |||| Sbjct 107531524 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 107531564 >seq30835 Length=9899 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || ||||||||||| || | || |||||||| | ||||||||| Sbjct 3437 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 3378 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||||||| | || | ||| || | ||||||||| | || || ||| | Sbjct 3377 ACTCCTAGTCCCATGTCTCCAGACCGCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 3318 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || || ||||| | | | || || ||||||| | |||| Sbjct 3317 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 3277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414289411930144