Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1324 89.7 3e-13 >seq1324 Length=11587733 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || || ||||||||||| || || ||| Sbjct 8091436 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8091495 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || ||||| |||||| | || ||||| || Sbjct 8091496 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCAGACCAG 8091555 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || ||||| || | ||||| | || |||||| Sbjct 8091556 CAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 8091615 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 8091616 ATCCAGAAGGAATCCAC 8091632 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 |||||| || || || ||||| || || || || ||||| || || || || ||| || Sbjct 8091210 GCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGA 8091269 Query 23673 CACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACA 23732 ||| |||||| | || || || ||||| || || | || ||||| || || Sbjct 8091270 CACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCA 8091329 Query 23733 GCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACAT 23792 | | | || ||||| ||||| || |||||||| | ||||| | ||| |||||||| Sbjct 8091330 GAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAACAT 8091389 Query 23793 ACAAAAAGAGTCCAC 23807 || ||||||||||| Sbjct 8091390 CCAGAAAGAGTCCAC 8091404 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||||||||| || || ||| Sbjct 8089040 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8089099 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| ||||| | || ||||| || Sbjct 8089100 GACACCATCGAGAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 8089158 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || |||||||| | ||||| | ||| ||||| Sbjct 8089159 GCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAA 8089218 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 8089219 CATCCAGAAGGAGTCAAC 8089236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337856783324768