Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq242 116 3e-21 seq458 111 1e-19 >seq242 Length=156412533 Score = 116 bits (128), Expect = 3e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || ||||| ||||||| || ||||| || Sbjct 135808587 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATTAGGCCCCTCTTCTTC 135808646 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| |||||||| || || ||||| || Sbjct 135808647 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 135808706 Query 4692 AC 4693 || Sbjct 135808707 AC 135808708 Score = 100 bits (110), Expect = 2e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 4925 TCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACAT 4983 ||||||| || | |||||| ||||| || || ||||||||||||||||| |||| ||||| Sbjct 135813451 TCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACAT 135813510 Query 4984 GAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTA 5043 |||| |||||||| | ||| || | || || || ||||| || || | || || | | Sbjct 135813511 GAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAATGAGGAAGGTCCTTTGACA 135813570 Query 5044 AATCAAC 5050 ||||||| Sbjct 135813571 AATCAAC 135813577 >seq458 Length=112617285 Score = 111 bits (122), Expect = 1e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| || || ||||| |||||||| || | ||| |||||||| ||||| || || Sbjct 99186506 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 99186447 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||| || | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 99186446 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCT 99186387 Query 4692 ACTA 4695 |||| Sbjct 99186386 ACTA 99186383 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 ||| || ||||| || || || || |||||||| |||||||||||||| || |||||||| Sbjct 99184829 AATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTG 99184770 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || | ||||||||| | ||| ||||| Sbjct 99184769 GAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 99184731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426856527672968