Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq242 131 1e-25 seq30835 127 2e-24 >seq242 Length=156412533 Score = 131 bits (144), Expect = 1e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 ||||| ||||| || || |||||||||||||| || || |||||||| || ||||| || Sbjct 107531404 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 107531463 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || |||||||| ||||| || || || | || |||| Sbjct 107531464 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 107531523 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||||| ||||| || | ||| ||||||||||| | |||||| ||| Sbjct 107531524 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGG 107531568 Score = 109 bits (120), Expect = 4e-19 Identities = 127/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| ||||||||||| ||||| || ||||| ||||||| || Sbjct 107535048 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 107535107 Query 27549 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 ||||| || || ||||| ||| || ||| |||| || || | || || || || | Sbjct 107535108 ACCCTCCTCTCTGGTGCT-GAAACCTTGCTTATCCAGGAACTCACGCGACCCATTAGCAT 107535166 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||| ||||| || || || | ||||||||||||| ||||| || || Sbjct 107535167 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 107535215 Score = 98.7 bits (108), Expect = 7e-16 Identities = 120/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 27497 TGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 27556 |||| |||||||| ||||||||||| ||||| || ||||| ||||||| || || || | Sbjct 107537127 TGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCGTCCT 107537186 Query 27557 CCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 27615 | || ||||| ||| | ||| |||| || || | || || || || ||||| ||| Sbjct 107537187 CTCTGGTGCT-GAAACGGTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAATC 107537245 Query 27616 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 || || || || | ||||||||||||| ||||| || || Sbjct 107537246 TTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 107537286 >seq30835 Length=9899 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 ||||| ||||| || || |||||||||||||| || || |||||||| || ||||| || Sbjct 3437 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 3378 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || |||| ||| ||||| || || || | || |||| Sbjct 3377 ACTCCTAGTCCCATGTCTCCAGACCGCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 3318 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||||| ||||| || | ||| ||||||||||| | |||||| ||| Sbjct 3317 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGG 3273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369340143023576