Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq458 111 2e-19 seq242 89.7 7e-13 seq235 87.8 2e-12 >seq458 Length=112617285 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||| |||||||| ||||| || ||||||| ||| | ||| || Sbjct 99186506 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 99186447 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 99186446 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGC 99186388 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 ||| |||| ||| || || || | |||||| |||||||| || || |||||||| || || Sbjct 99184835 ATCCTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 99184776 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | ||||||||||| ||||| || Sbjct 99184775 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 99184731 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || || || || |||||| Sbjct 99187747 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTGCCT 99187688 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| || || |||||||| || ||||| ||||| Sbjct 99187687 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 99187653 >seq242 Length=156412533 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || | || |||||||| || | || || Sbjct 135808587 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATTAGGCCCCTCTTCTTC 135808646 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 135808647 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 135808705 >seq235 Length=1083483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||| ||||| ||||||||||| ||||| || |||| || || || | || || || Sbjct 699927 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGC 699986 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| || ||||| ||||| || | || || ||||| | || || | |||||||| Sbjct 699987 TCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCATGGC 700046 Query 78123 TCTAGATATATTGCCATAACTCCAGGTC 78150 || || || || || | | | ||||||| Sbjct 700047 TCCAGGTAGATGGCAAAAGCCCCAGGTC 700074 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || || || || |||||||| |||||||| || || ||||||||||| | Sbjct 695992 ATCTCAGTGCACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 696051 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| |||||||| || || || | || || || || || |||| || ||||| || Sbjct 696052 TTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATGATG 696111 Query 77853 GATTTCCAGA 77862 | | ||||| Sbjct 696112 GCGTACCAGA 696121 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 |||||||| || || || || || ||||| |||||||| || || ||||||||||| | Sbjct 698916 ATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 698975 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| |||||||| || || || | || || || || || |||| || ||||| || Sbjct 698976 TTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATGATG 699035 Query 77853 GATTTCCAGA 77862 | | ||||| Sbjct 699036 GCGTACCAGA 699045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694346682077440