Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq30835 87.8 7e-13 seq242 82.4 3e-11 >seq30835 Length=9899 Score = 87.8 bits (96), Expect = 7e-13 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| ||| |||| |||||| | || | ||| ||||| || || || ||| | | || Sbjct 3277 ATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTACGTT-CTAAATGGTGAATTGTC 3335 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | ||||||||||||| |||||| | || || || ||||| |||||||| Sbjct 3336 TTGCCAACTCTATCAGCGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCAG 3395 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 |||||| |||| ||| | ||||||| Sbjct 3396 CTATTCACTGCTCACGTACATGATTGC 3422 >seq242 Length=156412533 Score = 82.4 bits (90), Expect = 3e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| ||| |||| |||||| | || | ||| ||||| || || || ||| | | || Sbjct 107531564 ATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTACGTT-CTAAATGGTGAATTGTC 107531506 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | |||||| |||||| |||||| | || || || ||||| |||||||| Sbjct 107531505 TTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCAG 107531446 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 |||||| |||| ||| | ||||||| Sbjct 107531445 CTATTCACTGCTCACGTACATGATTGC 107531419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190012259860560