Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1205 141 2e-28 seq1324 127 5e-24 >seq1205 Length=14428146 Score = 141 bits (156), Expect = 2e-28 Identities = 166/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || |||||||| || || ||||||||||| |||| | || | ||||||| Sbjct 1810551 AGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCATCT 1810492 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || || |||||||||||||| | | ||| |||||||| || Sbjct 1810491 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 1810432 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || ||||| || || Sbjct 1810431 TGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATG 1810375 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCT 152112 || ||||| || || ||||| ||||||| ||||||||| |||| Sbjct 1810374 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTTTCCCT 1810332 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || |||||||| || || ||||||||||| || | | || | ||||||| Sbjct 1811007 AGGACAAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGCCCATCT 1810948 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || || |||||||||||||| | | ||| |||||||| ||| Sbjct 1810947 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 1810888 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| || || |||| | | |||| ||| ||| || ||||| || || Sbjct 1810887 TGGATTTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATG 1810831 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||| || |||| |||||| Sbjct 1810830 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1810796 Score = 113 bits (124), Expect = 1e-19 Identities = 160/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || || ||||| |||||||| || || ||||||||||| || | | || Sbjct 1810788 CTGAGGCGCAGCACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTG 1810729 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| || || || || || || |||||||||||||| | | ||| ||| Sbjct 1810728 CGGCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCT 1810669 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| || || || || ||| || |||| | | |||| ||| ||| || ||| Sbjct 1810668 TCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCA 1810612 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || |||||||| |||| |||||| Sbjct 1810611 AGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1810568 >seq1324 Length=11587733 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || ||||| ||||| || ||||||||||| |||| | || Sbjct 8089261 CCTGAGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 8089202 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||| || || || || ||||| |||||||||||||| | | || || Sbjct 8089201 GCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCC 8089142 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || |||||| |||| | | |||| ||| ||| || || Sbjct 8089141 TTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTC 8089085 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| || || |||||||| |||| |||||| Sbjct 8089084 GAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 8089040 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || ||||| ||||| || ||||||||||| |||| | || Sbjct 8091885 CCTGAGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 8091826 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||| || || || ||||| || |||||||||||||| | | || || Sbjct 8091825 GCGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGAATGCC 8091766 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || ||| |||| | | |||| ||| ||| ||||| Sbjct 8091765 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACTTC 8091709 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||||||||||| |||||| Sbjct 8091708 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8091664 Score = 125 bits (138), Expect = 2e-23 Identities = 158/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||| || ||||| ||||||||||| || | | || | |||||| Sbjct 8089023 AGCACCAGGTGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 8088964 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| |||||||| || Sbjct 8088963 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 8088904 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || |||||||| || Sbjct 8088903 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCAAGAGTGATG 8088847 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || |||||||| |||| ||||||| Sbjct 8088846 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATT 8088811 Score = 114 bits (126), Expect = 3e-20 Identities = 161/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || ||||| ||||| || ||||||||||| || | | || Sbjct 8089489 CCTGAGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 8089430 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||| || || || || ||||| || |||||||||||||| | | ||| || Sbjct 8089429 GCGCCCATCCTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGGATACC 8089370 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || || |||| | | |||| ||| ||| ||||| Sbjct 8089369 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCAACTTC 8089313 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||| ||||||| |||||| Sbjct 8089312 CAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 8089268 Score = 105 bits (116), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || |||||||| ||||||||||| |||| | || | ||||||| Sbjct 8091419 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCT 8091360 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || || ||||| || Sbjct 8091359 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 8091300 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| | || | | |||| ||| ||| || ||||| || || Sbjct 8091299 TGGATCTTGGCCTTCACATTTTCAATGGTGTC---ACTGGGCTCCACCTCAAGGGTGATG 8091243 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGC 152102 || ||||| || || |||||||| |||| |||| Sbjct 8091242 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGC 8091210 Score = 100 bits (110), Expect = 7e-16 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || || || || ||||||||||| || | | || Sbjct 8091657 CCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 8091598 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||| || || || || || || || |||||||||||||| | | ||| || Sbjct 8091597 GCGCCCATCCTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATACC 8091538 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || ||| | || | | |||| ||| ||| || || Sbjct 8091537 TTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTGTC---ACTGGGCTCCACCTC 8091481 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| || || || |||||||||| |||||| Sbjct 8091480 GAGAGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 8091436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153272397627416